Basic Information

Insect: Chrysolina americana
Gene Symbol: topi
Assembly: GCA_958502065.1
Location: OY293412.1:92091419-92097316[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.46 1.3e+03 1.5 0.1 18 29 42 53 39 57 0.85

2 16 0.032 88 5.2 1.1 10 31 87 108 80 112 0.83

3 16 1.1e-05 0.032 16.2 0.5 4 38 110 139 107 145 0.76

4 16 0.0028 7.7 8.6 0.9 18 44 154 177 149 177 0.88

5 16 0.0019 5.2 9.1 0.4 16 40 184 205 181 208 0.88

6 16 0.011 32 6.6 0.3 18 39 214 232 206 236 0.85

7 16 0.03 85 5.2 0.6 17 26 241 250 234 263 0.83

8 16 0.28 7.8e+02 2.1 0.1 14 31 311 333 302 337 0.79

9 16 0.3 8.3e+02 2.1 1.0 11 39 337 360 329 364 0.76

10 16 0.66 1.8e+03 1.0 3.0 14 29 363 378 357 389 0.79

11 16 0.0014 4 9.5 0.4 13 29 391 407 379 421 0.74

12 16 0.025 69 5.5 0.8 5 43 416 448 412 449 0.73

13 16 0.0059 16 7.5 0.9 14 40 454 477 444 480 0.85

14 16 0.44 1.2e+03 1.5 0.4 18 41 486 506 483 507 0.72

15 16 0.0018 4.9 9.2 3.8 5 39 502 532 499 544 0.76

16 16 0.42 1.2e+03 1.6 2.6 7 40 531 561 527 563 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.46	1.3e+03	1.5	0.1	18	29	42	53	39	57	0.85
2	16	0.032	88	5.2	1.1	10	31	87	108	80	112	0.83
3	16	1.1e-05	0.032	16.2	0.5	4	38	110	139	107	145	0.76
4	16	0.0028	7.7	8.6	0.9	18	44	154	177	149	177	0.88
5	16	0.0019	5.2	9.1	0.4	16	40	184	205	181	208	0.88
6	16	0.011	32	6.6	0.3	18	39	214	232	206	236	0.85
7	16	0.03	85	5.2	0.6	17	26	241	250	234	263	0.83
8	16	0.28	7.8e+02	2.1	0.1	14	31	311	333	302	337	0.79
9	16	0.3	8.3e+02	2.1	1.0	11	39	337	360	329	364	0.76
10	16	0.66	1.8e+03	1.0	3.0	14	29	363	378	357	389	0.79
11	16	0.0014	4	9.5	0.4	13	29	391	407	379	421	0.74
12	16	0.025	69	5.5	0.8	5	43	416	448	412	449	0.73
13	16	0.0059	16	7.5	0.9	14	40	454	477	444	480	0.85
14	16	0.44	1.2e+03	1.5	0.4	18	41	486	506	483	507	0.72
15	16	0.0018	4.9	9.2	3.8	5	39	502	532	499	544	0.76
16	16	0.42	1.2e+03	1.6	2.6	7	40	531	561	527	563	0.78

Sequence Information

Coding Sequence: ATGACTTACTTTTCTAggaacaaaaagaaaaaaacaaggAAAAAACGACAAAATACAGATAAATCTACAAGTAAAAAACTCaaatcattcattatcaacCTCATGGAGCTTTCAATGCCACTGCATTGCAAAATTTGTGACGAAAATTACAACACAAACCATGAATTCGCCTTCCACTCCAAAGCACATGACGCAGACTTGATGTACTCCTGCCATCTATGCGAATTCAAATGCGATGCCAAAAAAGAAATCAGGGCCCACATGATGAACCACAACGTTTACAAATGCGAAATGTGCGACAAAATCTTCAAATTTAAACATGGCGCATACAGGCACGCGGAAATCCACTTGGATCAAAACAGTGTACAATGCGAAATATGCGGGAAAAACCTCCAAAGGCAATCTTTGAACACTCACCTGAAACTTCTTCACTCCGAGGAATTTTCTGGTGTGTCGTACGATTGTTCCATTTGCAAAAAAGCTTACAAATATAACTCTAGCCTCAAGAAACACATTTCTTTCAATCATAGAGAGCTCGGAATCGACGTTTCCGTCGTTTGTGACATATGCGGGAGAAGGATTTCCAGCAAAAGTAAGCTGCAGCAGCACCTCAAAATACACAGTGGCGAGAAACCGTATTCGTGTACATTTTGCGGGAAGCAGTTTCGATCCAAGGACACCATGAAATCGCACATGGTCGTGCATACTGGGGAAAAGCCCTACGTATGCGGGTACTGCGGAAAAAAGTTCGGCCAGAGTGCCCCATATCGATATCACATCAAAACTCACACCGGCGAGAAATCATCAGCTAGAAGTGCAGCAAACAACAGGTGGTCTAGGAAAAGaagaaatgagaaatccttGAATCGCAATGTGGCAAATGATGCTTTTCTAGAAAAGTTCCCATTTATTGTGAATGtcaatgaaatgaaacaatCAAAGACATGCAGTCTCTGTGAAGAGAGTTTTGAAAGGCACTTAGACTTTGCCTTGCATTCCACGGCTCACTCGCAGGACTTGGTATTTTCTTGTCATTTATGTAAAACTGAAATTAACCAAAAAATGTTGATAAAACACATGGAAATTCATGAACAATTGAAATGCACCCTTTGCAATAAATATCTCAAGAACCGAAATTACGCCAGCAAGCATTCCAAACTACATTCATTCGAAATGGAACTGGTCAAATGTCGTCTGTGCGGACAGCAACTAACAAGGAGGGACCTCAAAGACCACAAAATAAAGGAACACCAGGGATCCACGCCGGGGTCTGTCAAATGCTCGGTTTGTGACAAAGAATACCTGAGCAGGTCAAGCCTGCAGAGGCACTACTCGTCCAGTCACAAGGAGTTTGGCATTGATACCTCGAAAATATGCGATATGTGCGGAAAAGTGTACAGCAACACTCAAAAACTTCAAGAACATATAAGAATCCACACCGGGGTCAAGCCATTTGAATGTGCCCTTTGTCCAAAAAAATTCATGACGAAGCAAGTTCTGATAAAACACATGAGGTCGCACACTGACGAAAAACCACTGGCTTGCAATTTTTGCGgaaagaaattcaaatatgacggTGGGTATCGATACCATCTCAAGACACATACAGGGGAGAAAGAGCACTGCTGTCCTATTTGCGGAAGAGCTTTCATTTCCAAGTCGAATATGAAAGTTCACATGAAGGGTTGTGGAATGTCGAATTCCAAATGA
Protein Sequence: MTYFSRNKKKKTRKKRQNTDKSTSKKLKSFIINLMELSMPLHCKICDENYNTNHEFAFHSKAHDADLMYSCHLCEFKCDAKKEIRAHMMNHNVYKCEMCDKIFKFKHGAYRHAEIHLDQNSVQCEICGKNLQRQSLNTHLKLLHSEEFSGVSYDCSICKKAYKYNSSLKKHISFNHRELGIDVSVVCDICGRRISSKSKLQQHLKIHSGEKPYSCTFCGKQFRSKDTMKSHMVVHTGEKPYVCGYCGKKFGQSAPYRYHIKTHTGEKSSARSAANNRWSRKRRNEKSLNRNVANDAFLEKFPFIVNVNEMKQSKTCSLCEESFERHLDFALHSTAHSQDLVFSCHLCKTEINQKMLIKHMEIHEQLKCTLCNKYLKNRNYASKHSKLHSFEMELVKCRLCGQQLTRRDLKDHKIKEHQGSTPGSVKCSVCDKEYLSRSSLQRHYSSSHKEFGIDTSKICDMCGKVYSNTQKLQEHIRIHTGVKPFECALCPKKFMTKQVLIKHMRSHTDEKPLACNFCGKKFKYDGGYRYHLKTHTGEKEHCCPICGRAFISKSNMKVHMKGCGMSNSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00328483;
90% Identity: iTF_00328483;
80% Identity: iTF_00328483;