Basic Information

Insect: Chrysolina americana
Gene Symbol: clz9
Assembly: GCA_958502065.1
Location: OY293419.1:23373555-23375393[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.5e-08 1.1e-05 27.0 0.0 3 34 20 50 18 57 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.5e-08	1.1e-05	27.0	0.0	3	34	20	50	18	57	0.93

Sequence Information

Coding Sequence: ATGCCGCGCACCTACGTCAAAAAGCTGGGAGGTAGACCGTACCTCAACTATAATAAGGAGAGCATGGAGAAAGCCATTGAAGCTGTGAAGAAAGGCATGTCCAAATCTAGAGCAAGTCTAAAGTTTAAGGTTCCAAGAACAACTTTGATCGATAAAATTAGTGGAACTCATCTTTTAAAACCGGGTCGTCCATGTATACTGACTGTCGAGGAAGAACAGATGATAGCAAAATCCCTTGGTGCAGTTAGCAACTGGGGCTTCCCCATGACGCACCAAGATATTCGCATAGTTGTGGCAAAGTTTGTAACGAAGCAAGGCAGGGATATTCCGGGATGGAAGAACAACGAACCAGGTTTGGATTTCATAAACAAATTTGCTGAAAGAAACAACCTGACAACCCGGTTGGCTTCAAATATCAAACGTCAGCGCTCTGCGGTGGGTAAACCGGAAATAAAAGAATTTTTCGACAACATTAAAGACAACTTGGAACATGCGTTACCGGAACATGTCTATAATTACGACGAAACTAACATCACTGATGATCCTGGTGCAAAAAAAGTATTGGTGCCCAGAGGAACTAAGAGAGTCGAGCGAGTTCAAGAGCACTCTAGGACATCGATCAGTATAATGATTTGCGGAACAGCTAAGGGCATCCTGCTTCCACCCATGGTGGTCTACAAAGCCCAACACTTATACGAAAATTTGACGACAGGAGGTCCTGCGGGCACAGTATATGAGGTCACGCCAAGTGGTTGGTTTGATATgacaacatttgaaaaatggttCTTCGATATTTTGATCCCTCACATAAACGCCAATAGCTCCCCAGAAGAAACAAAGGTTGTGATTGGAGATAACCTTGCGTCACATTTCTCTCCTCGTGTCGTCGAAGCAGCAATAGCGAATAATATCTACATGACGCCTCTGCCACCAAATTCGACACATCTGATGCAGCCTTTAGATGTGAGTTTTTTTgcgcccatgaagcgaaaatgGCGAGAAGTCTTAGATACGTGGAGGAAGGAGTGTCGTCGGAAAGGAAGCATTCCAAAAGAACAATTCCCCAACTTGCTGAATCGCTTGTGGTCTCATATAGCAGAAAACGCTTCCACAAACCTGCAATCTGGCTTTAGGGCAACAGGGCTAAGCCCATTTGATCCAGAAAGAGTTTTCGCCAAACTTCCTGGCAACGAATTGAGTTCCGAGAGGGTGCTAGATTCCAGTTTACTAGAATTTCTAAAGGAATCTAGAGGATATTCTAATGCGCAGGCAACGCCTCGCAAAAGAGGAAAGAAAATAGCAACACGGCCAGGTCAACAAATGCAGATGCCAGTTGCAACAAGCACTCCATCCCGCTCGGAAGCAGCAATGGAACAAGTTGATTTACCAGAAATTGTTCATGTTGAAACAACTTCCATCACGCAAAACCCGAAGAAAAAGTCAAAGGCAAGTCGCCCTAAaccactgaaaatgaaaatcgttGAACCTGATGCACCTGGACCATCGAGAAAGAGATCCACAAAAAAAGTCACTGATTCTGATTCTCTTTGCTCTGTATGCAAATGTTCTTACGCACACTATACTGTAGACAAAGACTGGATTTGTTGCATTTCGTGTTTGAAGTGGGTGTGCGGTATTTGCAATATTTTCTCCAATGACCCTCAATATGAATGTCCTGCCTGCAATTGCTGTTCCATTTGTCTAATAGACTTTTCCGAATACACGAACCAAAAAGCTTGGATTAAGTGTGTGACTTGTGGAAAGTGGGTTTGTGGACACTGCAACGGGGGTTCCAACCAAGCGAGCTACGAATGTGCCTCATGCTTCGATGATGATTAA
Protein Sequence: MPRTYVKKLGGRPYLNYNKESMEKAIEAVKKGMSKSRASLKFKVPRTTLIDKISGTHLLKPGRPCILTVEEEQMIAKSLGAVSNWGFPMTHQDIRIVVAKFVTKQGRDIPGWKNNEPGLDFINKFAERNNLTTRLASNIKRQRSAVGKPEIKEFFDNIKDNLEHALPEHVYNYDETNITDDPGAKKVLVPRGTKRVERVQEHSRTSISIMICGTAKGILLPPMVVYKAQHLYENLTTGGPAGTVYEVTPSGWFDMTTFEKWFFDILIPHINANSSPEETKVVIGDNLASHFSPRVVEAAIANNIYMTPLPPNSTHLMQPLDVSFFAPMKRKWREVLDTWRKECRRKGSIPKEQFPNLLNRLWSHIAENASTNLQSGFRATGLSPFDPERVFAKLPGNELSSERVLDSSLLEFLKESRGYSNAQATPRKRGKKIATRPGQQMQMPVATSTPSRSEAAMEQVDLPEIVHVETTSITQNPKKKSKASRPKPLKMKIVEPDAPGPSRKRSTKKVTDSDSLCSVCKCSYAHYTVDKDWICCISCLKWVCGICNIFSNDPQYECPACNCCSICLIDFSEYTNQKAWIKCVTCGKWVCGHCNGGSNQASYECASCFDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01284357;
90% Identity: iTF_01284355;
80% Identity: iTF_00327962;