Cinc016574.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- -
- Assembly
- GCA_941860345.1
- Location
- OW796110.1:7084055-7094572[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0091 0.7 10.8 1.2 1 23 218 240 218 240 0.98 2 12 0.061 4.7 8.2 2.8 1 23 247 270 247 270 0.92 3 12 0.11 8.6 7.4 1.5 1 23 274 296 274 296 0.95 4 12 0.0017 0.13 13.0 6.6 1 23 301 323 301 324 0.96 5 12 0.0024 0.18 12.6 1.7 1 23 328 351 328 351 0.95 6 12 0.0025 0.19 12.5 1.1 2 22 367 387 366 391 0.92 7 12 0.0031 0.24 12.3 0.1 2 23 400 421 399 421 0.97 8 12 8.9e-05 0.0068 17.1 0.2 2 23 439 461 438 461 0.96 9 12 3.5e-06 0.00027 21.5 1.8 2 23 471 492 470 492 0.97 10 12 8.3e-05 0.0064 17.2 5.0 1 23 498 520 498 520 0.97 11 12 4.4e-06 0.00034 21.2 1.1 1 23 526 548 526 548 0.98 12 12 1.5e-06 0.00012 22.7 1.3 1 23 554 577 554 577 0.98
Sequence Information
- Coding Sequence
- ATGGATTTTGCAGCTATATGCAGAATATGTTTAGTAAATAATGTTCGCATGCATACAGTAAACAGTCGGCAGTTACAGGAAATATACGAAAGGCTCACAAATATACCGTTTGACACAGAAAGAAGACCGCTACTTGCCTGCTATTTTTGCTACACACATCTGAAGAAATGTTATCAATTTAAATTAAGATGCCTACAAAGTGAAGAAATATTTATAAATACTATTAATGGAAATTTTGAGATAAAAAGCAATGAAAGTCCCGCATACAGCCAAACACCAGTACAGCAAATTAATATAACAGAGGAATGCCGGGACAATACAGTACAGGAGTTCTCAAACGTTAAGACAGAAATAAATATTGATAATATAGACAATGTTGTATTTAAAGAGGAGCGTGGTGATGAACTAGCCATAGAACACAGTTATTCAGAAACAGAGGATATAAGACAGAGTGACTCAGAAGATGATGTGCCCCTCACGAGAATCAAGAGTGAAGCAGAACAGACTAAGAAGAAGAGAGTTAGAGGGAGAAAAGAGAAGATTAATAAGGGTGACAATGACACTACACTCCCAGTAATACTCCTAACTAAAGAGCAGCAGATAGCCAACCTCCTCGCTAAGGCTAAGTCTGTGAACTACACGTCGTCGCCGTTCCGGTGCGAGCAGTGCTACAGGGGGTTTGTGGACAGCCGGGCCTATGATAATCATAAGCTGAAGCATGATGTGCGCAGCGGTTCCTACATATGCGACATATGCTGCATGCGTTACCGCACGCCGCGCCACCTCCGCACGCACGCCATCAACTCGCACGCACGCATATACAAGTGCGATAAGTGCGGGCATGTCGCTCATACTGCAAATCAAGCAAAAGTTCACGAGAAATGGCATAACGGGCATACATATGAATGCCAATTATGCAGCCATAAGTTTAGGAAACCTACGTCATACCTATCGCATATGCGGAAACATCATCCTACAGAGCATGTATGCAACATATGCGGAGAGAACTTTGTGGGCAAGCATGGTTTGCTCATGCATAAGAGTAAGACGCATCGAGATGAAAAGGTAGAAAATTCGAAAGATCCAAAACTTGAAAAATACTGCAGCGACTGCAACATACAGTTCTGTTCACAAGACGCCTGGAGCCGACATATATTAACTTCGATCAATCATAAACTCAAAAATGATAATAATACACAATGCATGATATGTAGCTGGCGTTACACGGGTAACGTTACTCTCGCCACGCATATGATGGAGCACGAACGGAGTCTGCGACAGACGAGACGACCGACGCTTGTAGATAAACATCTTAGGTGTCAGCAGTGCGGTGCGAATTTCGCCGTTAGATCTAAACTACAAGCACACATCAACCGAATACATCTCGGATTAAAGTATAACAAGAATATCGTTTGTGAAGTCTGTGGCAAAAAGTGTACGTCAAACGCAAGTCTAAAATATCACCAACGCACTCACACCGGTGAGAAGCCGTATTGCTGTCTCATTTGTTCCAAGCACTTTAGTGACAGCAACCAACTGAAGATCCACACTCGTATACACACAGGGGAGAAGCCCTATGTGTGTGCGGCGTGTGGGAAGAGGTTCTGTCAGAAACCAGCGCTGAATAGGCATTACAGGGTACATACCGGAGCAAAGCCTTATACTTGCCAATACTGTTCGAGAGCATTCAGTCAATCTAATTCTCTAAAACTCCACGTGAGAACAGTCCATCTGAAACAACCAGCTAACAGCAGGAAAAAGAACCAAGTAGATGTTGAAAAGAATGTAGATAAAAATACTCAAGATGCACTGACTGTGTGA
- Protein Sequence
- MDFAAICRICLVNNVRMHTVNSRQLQEIYERLTNIPFDTERRPLLACYFCYTHLKKCYQFKLRCLQSEEIFINTINGNFEIKSNESPAYSQTPVQQINITEECRDNTVQEFSNVKTEINIDNIDNVVFKEERGDELAIEHSYSETEDIRQSDSEDDVPLTRIKSEAEQTKKKRVRGRKEKINKGDNDTTLPVILLTKEQQIANLLAKAKSVNYTSSPFRCEQCYRGFVDSRAYDNHKLKHDVRSGSYICDICCMRYRTPRHLRTHAINSHARIYKCDKCGHVAHTANQAKVHEKWHNGHTYECQLCSHKFRKPTSYLSHMRKHHPTEHVCNICGENFVGKHGLLMHKSKTHRDEKVENSKDPKLEKYCSDCNIQFCSQDAWSRHILTSINHKLKNDNNTQCMICSWRYTGNVTLATHMMEHERSLRQTRRPTLVDKHLRCQQCGANFAVRSKLQAHINRIHLGLKYNKNIVCEVCGKKCTSNASLKYHQRTHTGEKPYCCLICSKHFSDSNQLKIHTRIHTGEKPYVCAACGKRFCQKPALNRHYRVHTGAKPYTCQYCSRAFSQSNSLKLHVRTVHLKQPANSRKKNQVDVEKNVDKNTQDALTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00186506; iTF_01221841; iTF_01487923;
- 90% Identity
- -
- 80% Identity
- -