Apul006161.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997792.1:1210878-1220677[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0083 0.86 10.9 1.1 1 23 122 144 122 144 0.96 2 12 0.44 45 5.5 2.0 1 23 151 174 151 174 0.90 3 12 0.1 11 7.5 4.5 1 23 178 200 178 200 0.97 4 12 0.001 0.11 13.8 4.7 1 23 205 228 205 228 0.98 5 12 0.00053 0.055 14.7 1.7 1 23 232 255 232 255 0.95 6 12 0.0061 0.63 11.4 1.1 3 21 272 290 271 295 0.93 7 12 0.00012 0.012 16.7 0.1 2 23 304 325 303 325 0.96 8 12 1.8e-05 0.0018 19.4 0.5 2 23 345 367 344 367 0.96 9 12 4.4e-06 0.00046 21.3 1.9 2 23 377 398 376 398 0.97 10 12 1.3e-05 0.0014 19.8 3.7 1 23 404 426 404 426 0.99 11 12 1.2e-06 0.00012 23.1 0.2 1 23 432 454 432 454 0.98 12 12 7.1e-07 7.4e-05 23.7 2.2 1 23 460 483 460 483 0.98
Sequence Information
- Coding Sequence
- ATGGATATTGTAGATACATCTACAGAGGCAGAGCAAGGTGTTACAGTAGTTAAGAAGGAGTTACCTATTGAAAATACCGATAATGTTTTGTTTAAAGAGGAGTGTGCGGAAGAACTAGCCACAGAACCTCACAGTTACTCGGACACGGATGCCAACAGACAGAGTGATTCAGAAGATGACGTGCCTCTCACTAGAATAAAGAACGAAGTAGAACAGACTAAGAAGAAGAGAGTAAGAGGGAGAAAGGAGAAGAAGAGTAAAGACGATTACAAGACATCTGCCCACGTTATATTACTGACTAAAGAACAGCAGGTAGAGAATCTTCTAGCAAGAACTAAATCTTCAAATTATACTTCTTCGCCGTTTAAATGTGAACAATGTTTCAAAGGGTTTGTGGATACCAGGGCCTACGCGAACCATAAGGTTAAACATGATATTCGTAGCGGCACTCACGTCTGCGAGATATGCTGCATGCGGTATCGCTCGGCGCAACTCCTGCGCACACACACGGTCAACGCTCACGCCAGGATCTTCAAGTGTCACACTTGTGGGCATATCACTCATACTGCGAGCCAAGCAAGGGTTCATGAGAAATGGCATAACGGACATACATACGAATGTCAGTTGTGCAGCCATAAGTTTAGAAAACCAACCTCCTACCTCTCGCATATGCGCAAGCGGCACCCGACTGAGCATGTATGCAACATATGCGGGGAGAGCTTCGTCGGCAAGCATGGCTTACTCATGCACAAGAGCAAGACGCATAGGGATGAGAAAGTAGAAAACTCAAAAGAGCCAAAATCCGAGAGATTTTGCAGCGACTGTAACATACAGTTTTGTTCCCTCGACGCTTGGAAACGACATATATTGAGCTCAATCAACCATACTCTTAAGAATGATAATAATTCCCAATGCATGATATGTGGCTGGCGTTTCTCCGGTAACGTGACTCTAGCGACTCATATGTTGGAACACGAGCGGAGTTTGCGGCAGGCGAGGAGGCAGACCCTGGTGGCTGGGGATAGGCATTTGAGGTGTCAGCAGTGTGGTGCAAACTTCGTGAGTAGATCAAAACTGCAAGCGCACATCAACAGAACGCATCTCGGACTGAAATACAACAAGAATATTGTGTGCGAAGTATGTGGCAAGAAGTGTACGTCAAACGCAACTCTCAAATACCATCAACGCACACACACAGGCGAGAAGCCATACTCCTGCGCAACCTGCACCAAACACTTCTCCGACAGCAACCAGCTGAGGATACACACACGCACACACACAGGCGAGAAGCCGTATGTGTGTGCGGCCTGCGGGAAGAGGTTCAGCCAGAAGCCGGCGCTGAACAGACATTATAGGGTACACACCGGTGCAAAGCCCTACACATGTCAATACTGCTCAAGAACCTTCAGCCAGTCAAACTCTTTGAAACTACACATCAAAACTGTACACTTAAAACAACCGGCCAACAGTAGGAAAAATAAAACGCAAGAGGTTAATAAAAATGTTGATAAAAATACTCAGGAATTGGCTGTGTAG
- Protein Sequence
- MDIVDTSTEAEQGVTVVKKELPIENTDNVLFKEECAEELATEPHSYSDTDANRQSDSEDDVPLTRIKNEVEQTKKKRVRGRKEKKSKDDYKTSAHVILLTKEQQVENLLARTKSSNYTSSPFKCEQCFKGFVDTRAYANHKVKHDIRSGTHVCEICCMRYRSAQLLRTHTVNAHARIFKCHTCGHITHTASQARVHEKWHNGHTYECQLCSHKFRKPTSYLSHMRKRHPTEHVCNICGESFVGKHGLLMHKSKTHRDEKVENSKEPKSERFCSDCNIQFCSLDAWKRHILSSINHTLKNDNNSQCMICGWRFSGNVTLATHMLEHERSLRQARRQTLVAGDRHLRCQQCGANFVSRSKLQAHINRTHLGLKYNKNIVCEVCGKKCTSNATLKYHQRTHTGEKPYSCATCTKHFSDSNQLRIHTRTHTGEKPYVCAACGKRFSQKPALNRHYRVHTGAKPYTCQYCSRTFSQSNSLKLHIKTVHLKQPANSRKNKTQEVNKNVDKNTQELAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327302;
- 90% Identity
- -
- 80% Identity
- -