Cinc011676.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- -
- Assembly
- GCA_941860345.1
- Location
- OW796103.1:10139008-10144460[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.7 2.8e+02 2.6 0.2 1 23 85 108 85 108 0.89 2 18 0.21 16 6.5 0.1 3 23 113 133 111 133 0.96 3 18 0.0018 0.14 13.0 0.1 2 23 137 159 136 159 0.96 4 18 0.46 35 5.4 0.4 3 23 391 412 390 412 0.95 5 18 0.039 3 8.8 0.1 1 20 420 439 420 441 0.94 6 18 0.008 0.61 11.0 0.3 1 23 450 472 450 472 0.95 7 18 0.00062 0.048 14.4 1.7 1 23 520 543 520 543 0.96 8 18 3.8 2.9e+02 2.5 1.5 8 23 593 609 584 609 0.85 9 18 0.079 6.1 7.8 0.4 3 23 621 642 620 642 0.86 10 18 0.92 70 4.5 3.3 1 23 647 670 647 670 0.95 11 18 2.6e-05 0.002 18.8 1.9 1 23 676 698 676 698 0.96 12 18 6.8e-05 0.0052 17.5 1.5 1 23 705 727 705 727 0.98 13 18 6.4e-05 0.0049 17.5 2.3 1 23 732 754 732 754 0.96 14 18 0.00018 0.014 16.1 2.2 1 23 760 782 760 782 0.98 15 18 3.6e-07 2.8e-05 24.6 1.9 1 23 788 810 788 810 0.98 16 18 0.00031 0.024 15.4 2.5 2 23 817 838 817 838 0.98 17 18 0.00059 0.046 14.5 0.4 2 23 846 868 845 868 0.97 18 18 0.00021 0.016 15.9 0.1 1 23 873 895 873 895 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCGGACGATTCCGATGATGAACCGCTGTCAGTTATAGCGGCTAATAAGAAATTGAATCCTGATCTAGAGATAACACCATCTGATGGTCCAGAAACCCCATTAAAGAAGAAGAAGAAGGTACAGCCACCGAAGCGCCTTTCTATTACTATAAACCTTCAACGCAGTAAGGCTGCACCAGCGCCGCCTGTGATAGAACGACCTGCTGATGTCTGGCTGTATTTGAAAGACCTTAATCCATCAGGCCCATACAACTGCTTGCTCTGCACAGAATGGTTTATAAACAGGTCAAAAATGATTATACACTATGTCTTGAATCATAAGAAGGATTTTTGTGGTATCTGCAGGTATTTTGTCCCTGATAGAGAGGCTTGGTGGAATCACATGAAGTTCCACACTCCCTGGCCTTGCTCCCAATGTGTTGAGAACTTTGAAACTGAAGTAGACTTACGCAACCATCTAAGAAGTGCTCACAACTTGGTTCACTGTAGACTCTGCCATTTTCGTGTCATGAATGGTGATCCGTACCACACTCATTTATTCCAGAAACACAATGTCAGTAATGTGGCAAGTAAGGATGAGGATATTCTGTGGGAACTGGAATATGATGGAACATCTAATTTCATTTGTTTATTATGCTCTAAGACAAACAACTCTACTCGAACATTCTTCAATCATTACATGGGCTATCACCACTTTACCCTAAAATGCTTCACAGCTCTCCTGGCAGGCAAAGACCCTCCATTCTCAGTGTGTGGTGCAGACCTGCGGTCTGAGTTTGTTGAAGAGCAACTAAAGAACCATGCAAAGTATGGGTATGTTGACTCTGAATTTAAACCACCCGAAATGGTAGAAGGGGGTTGTGATACAAAAGACTTGCTAAAAGTTCTAATACCAGAAATTAAACAGGAAATATTTAGTGCTGATGAGAACAAGAATGATGAGGGTGCTGGACCACAGCCTAAGGATGATGATGACGATGATATTTATAAAAACTATAATGGTGATGATGATTTTGATGTGACTTTAACAGAGTTGCTGGTTGTTCAGAAATGTTACAAGGACTACATAGGTGATGTACTCTGTGATATAAACTCTAACTGTGTTTATGAGTACTCTGACATAGATTATGAGAAGGCTCTATTGGATCCTTCAGTGAACGTGGACTGTGGGTTATGTAAAGCCCAATTCATTAGCTTAACAGGGTTTTTAACTCACATGTTTAAGATGCACTGTGTGAAGTCTGCCCCATTGTACTCATGCAGGGTGTGTGCAACAACATTTGATACTCAGAATGAGTTGGACAACCATGTTAGTAATGAGTTGGGAGACTTTGAAGATCTCTTCATCTGTCAGTTTTGTGATGAGGAGTTTGCTGACAGAGAGGCCACTAGAAGGCATCTGACTGACCACTGGGATCTGATAGAATATGACAATTGTTTTAGCCCCCACCTAGGATTTAAATGCAGCTTCTGTCCGACACTGTTTTGGCATGAAACTGATAGAGAAACTCATCAAGTTCGAGCTCATTTCCTTAACCATAAAGAGGTTTTCTTCAAATGTGAAACCTGTAAGGAAATTTTTAGTGATAAGGTCTGGTTCATCCACCACTACTTGGTTACACACATTACAGACGGCAAGGCGCCTCTCTACCTCCTAAAGTGCTCAATGTGCTGCCAAGTACTTTCTGACATAGAGAAGATGCGGGCGCACTTCAATAGTGAGCATCCGGAGGCCAGGAAGGTGTACTGTTCCTTAGACTCCTGTAAATACAAGCCTCTGAGCCACAAGAAGTCGTTTAAGCTACATGTTAGGACAATTCACACATCGAAACCGCGTCCTGAGCGCGCGGTGGACTGCAGCGTGTGCGGGCGCGAGTTCACAAGTTCCCGCGCTTGTGGCGCGCACATGGCGCAGGCGCACGGCCCGGGGAAGTTCAAGTGCAAGCTCTGTCATGAAGTGCTGCATACTTTGGACGAAAGGAAACTCCACTACTTGATCAGCCACCCCGGGCAGCACCCATTCGAGTGCAACGAGTGCGGCAAGTCCTTCCAGTACAAGTCATCGCTCTACATGCACAAACAGGACCACCTGCCCAACAAGCAGAACTACACGTGCACATACTGCGGGAAGATATTTCTGAAACGCGACTCATTCCGCGAGCACATGCAGATCCACGAGGGTCCGCGTCACGCGTGCTCGTACTGCCCGATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCCGCCACACCGGCGAGCGGCCCTACGCCTGTCCCCACTGTCCGCGGAGCTTCGCTGATAAGGGCGCTTGTACTTCACATACTAGAACCCATTCCAAGGACACGTCATATGCGTGCATGTACTGCGGCAAGACATTCGTGCAGAAGTCTAAGTTGACGTACCACATTAGGAAACATACAGGAGAAAACCTGGAGACTTGCAACGTATGTTCGAAACTGTTCACAAGCGCGTGTTCGTTACGTGAACATATGAAGATACACGAACGTAAGAAGGAACTCGTGAAATGTCCTTTATGTGAACGTAAGTACGCGGACGAGCGCTACATGCTGCGGCACCTGCGCACGACGCACACGCACGCGCGCTTCCCGTGCCCCGTGTGCGGCAAGCTGCTCACCTCCGCCGCCGGCCTCAGGCACCACGTCATCACGCACAGCACGCTCAAGACGCTACGGGTCAGTACATAG
- Protein Sequence
- MSSDDSDDEPLSVIAANKKLNPDLEITPSDGPETPLKKKKKVQPPKRLSITINLQRSKAAPAPPVIERPADVWLYLKDLNPSGPYNCLLCTEWFINRSKMIIHYVLNHKKDFCGICRYFVPDREAWWNHMKFHTPWPCSQCVENFETEVDLRNHLRSAHNLVHCRLCHFRVMNGDPYHTHLFQKHNVSNVASKDEDILWELEYDGTSNFICLLCSKTNNSTRTFFNHYMGYHHFTLKCFTALLAGKDPPFSVCGADLRSEFVEEQLKNHAKYGYVDSEFKPPEMVEGGCDTKDLLKVLIPEIKQEIFSADENKNDEGAGPQPKDDDDDDIYKNYNGDDDFDVTLTELLVVQKCYKDYIGDVLCDINSNCVYEYSDIDYEKALLDPSVNVDCGLCKAQFISLTGFLTHMFKMHCVKSAPLYSCRVCATTFDTQNELDNHVSNELGDFEDLFICQFCDEEFADREATRRHLTDHWDLIEYDNCFSPHLGFKCSFCPTLFWHETDRETHQVRAHFLNHKEVFFKCETCKEIFSDKVWFIHHYLVTHITDGKAPLYLLKCSMCCQVLSDIEKMRAHFNSEHPEARKVYCSLDSCKYKPLSHKKSFKLHVRTIHTSKPRPERAVDCSVCGREFTSSRACGAHMAQAHGPGKFKCKLCHEVLHTLDERKLHYLISHPGQHPFECNECGKSFQYKSSLYMHKQDHLPNKQNYTCTYCGKIFLKRDSFREHMQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRSFADKGACTSHTRTHSKDTSYACMYCGKTFVQKSKLTYHIRKHTGENLETCNVCSKLFTSACSLREHMKIHERKKELVKCPLCERKYADERYMLRHLRTTHTHARFPCPVCGKLLTSAAGLRHHVITHSTLKTLRVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00001385;
- 90% Identity
- -
- 80% Identity
- -