Cinc017082.3
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- Arid2
- Assembly
- GCA_941860345.1
- Location
- OW796111.1:2887120-2917877[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-09 7.5e-06 26.8 0.0 2 77 595 676 594 678 0.81 2 2 1.7e-09 6.2e-06 27.0 0.0 2 78 1094 1176 1093 1177 0.82
Sequence Information
- Coding Sequence
- ATGGCAAAACAACAAATAAATACGAAATCAAGCAACTATGCGAAGGATAAAGAGGCATTCCTCAAGGATTTGAAGCAATTCAACGAATCTAAAAATGTTCCTACAAAAGTACCAATAGTGAATGGCATAGAAATAGATCTTTATCTTTTCTACACATTAGTGCAACAACGAGGCGGACTCGGAAAGGTAAATCAGAATGACACTTGGGAATCATTTCTGAGGCCGCTGCGGCTGCCACATCCTTGCATCAATGGGTCAACATTATTGAGAAGGATTTATGGAACATATTTGGAAAAATACGAAAGAGCAAAAGGCCCACCGGGTCGAGATGAAGACAACGACTTTGACGAGGAGCTGTCGCGTCGCGGCCGCGGCGGGAACATACCGCGCATGTCCTTCGGAGGGGGTACGTACATATCAGCATCAGGTGAGGCGCTCCGCACTGGGTCCCGGGTCGCGGCCGCATCAGAGCGACTCGCCCTCTCTCTCCTGTCACCAATGCCGAACGAACAAGACTTCGCCGTCAACGTGTGCACTGTGCTAGCCGCTGACCACTCGAACAGACTGCCTTTGAGCACCACCCCCCATATATTGGACTTTTTACTGGCTCATGCTGGAGTTTATAATCATTCAAGTCTTCGCGACACAATCGGCCGTTCTTACTACGAGGCCAGAGGGCGTTACCCGGACGACTTCTGGGCAATGCGGGCGGGCGGGGGCGGGGCTAAAGAGTTAGCTGACGAGACCAAGTTCATGCAACCGGGGGTCGAACAACCCGACCTGATAGTGCAGGCTAGAGCCGCGCATAATACACTCACAGACTGTCTGATGAATGAAGCTGAGTTGGAAGAGGTTATAGCTGAGAAGGTGGTTGAAGATGATATATTCGAAGACTGGATGGTAGAGCCGGCAGAAGAAAGCTTACTCTTCGCCCCGGAGCTCCCGGGCGGCGCGTCCTGTGTTTACACGCAGCGAGTGCTTCAGATAGCCTCTATCGTCCGTTCGCTTTCCTTCCACGAAGAAAACGTGCAGTATCTGTCGAAAAATACTACTCTAATCAGATTTCTACTGCTCTGCGCAAACAGTTGGGTGGGAACGCTACGTCAATCCGGTCTCGACACACTCGGCAACGTTTCATCtgagcttattataaagGACCCAGCAACCTGCCTAATATCTCGTCACGTGATATCGACTATCCAAGCGGCATTAGCTTCGCAGGACAGAGCGAGAGTACTCGCCGCGCTTGAGTTACTGAATAAACTGGCTCAGAACGAGGTCAATGAAGATGCACTACTGAAATCTTTGGAGGCTAAGATATACCAAGACGTATGTTCGTTACTGACACTCCGTGATATCATGGTGTTAGTATGTACACTAGAGTGCGTGTACGCGCTCACATCACTGGGAGACCGCGCAAGTGAAGCCGTGGCCCGCGTGCCCGGCCTCATCAGCACGCTGGTCTCGCTCGTCACCGTCGAGGCGCAGAGCTACGGCCCGCGCGCGTGTATTCTAATGCGCGTGGTGGAGACAGTGTCGGGACCTAGCGCACTCGCCGCGCATCAAGACCACGAGCGACAGCTGCACCAACATCAACAGCACATTTTCAACATCATTTATCACCCAAACTATTTACCTAAAAATTGCACCACACAGGCTCAAACCCCAGTAAAGCCAGTAGAACAACAAGCAGCAATACCAACGCCCGCAGTATCAGCGCTGGCGCCAGTATCGTCCATACAACAGTCGCACTTACAACAGCGGACAGTGCAGGAAAATGAGCATTTTGCTCAAGCATGGCTTCGGTCGGCGTACGAAGTGTTGCCAGCTAATGACAATAGTGCGTGTGACGCGAATGAAGTGTATAGGCAGTATGTAGCATGCTGTACTAAGCTTGCAAGGAAAGGAGTTATAGGACCCACACATTTCCCGAGATTGGTCAGGACTGTATTCGGAGGGACTGTAGGTCCAAACAATGTGACGCTGTCTTCCGGCGAGACGCAACAGGTTTACATCGGCATCCGATGGAGGAACGCACAGAACCGAACTAACCCTACTACAGGTCCATCATCACCCATATTGAAGGCACAACTGACGAATAAGGCGGCGGCGGAAGCGAAACCCGTTGTCTCACAAACACCAGTACAGATTTCGGACGAGTTGCCCGAGTCCATCCGTGACCACGCAAGTCTTCGGGACACAATCGGCCGTTCTTACTACGAGGCCAGAGGGCGCTACCCGGACGACTTCTGGGCAATGCGTGCGGGCGGGGGCGGGGCTAAGGAGTTAGCTGACGAGACCAAGTTCATGCAACCGGGGGTCGAACAACCCGACCTGATAGTGCAGGCTAGAGCCGCGCATAATACACTCACAGACTGCCTGATGAATGACGCTGAGTTGGAAGAGGTTATAGCTGAGAAGGTGGTTGAAGATGATATATTCGAAGACTGGATGGTAGAGCCGGCAGAGGAAAGCTTGCTGTTCGCCCCGGAGCTCCCGGGCGGCGCGTCTTGTGTTTACACGCAGCGAGTGCTACAGATTGCTTCCATCGTCCGTTCACTGTCCTTCCACGAAGAAAACGTGCAGTATCTGTCGAAGAATACCACTCTTATCAGATTCCTACTGCTCTGCGCAAACAGTTGGGTGGGAACGCTACGTCAATCCGGTCTCGACACACTCGGCAACGTTTCATCTGAGCTTATTATAAAGGACCCAGCAACCTGCCTAATATCTCGTCACGTGATATCGACTATCCAAGCGGCATTAGCGTCACAGGACAGAGCGAGAGTACTCGCTGCTCTCGAGTTACTGAATAAACTGGCACAGAATGAAGTCAATGAAGATGCACTGCTGAAATCTTTGGAGGCTAAGATATACCAAGACGTATGTTCGTTACTGACACTCCGTGATATCATGGTGTTAGTATGTACACTAGAGTGCGTGTACGCGCTCACATCGTTGGGGGACCGCGCAAGTGAAGCCGTGGCGCGCGTGCCCGGCCTCATCAGCACGCTGGTCTCGCTTGTCACTGTCGAGGCGCAGAGCTACGGCCCTCGCGCGTGCATCCTAATGCGCGTGGTGGAGACCGTGTCGGGCCCCAGCGCGCTCGCCGCGCATCAAGACCACGAGCGACAGCTGCACCAACACCAACAGGCCCAAACCCCAGTAAAGCCAGTAGAACAGCAAGCAGCAATACCGACGCCCGCGGTATCAGCGCTGGCGCCAGTATCGTCCATACAACAGTCCCACTTACAACAGCGGACAGTGCAGGAAAATGAGCATTTTGCTCAAGCATGGCTTCGGTCGGCATACGAAGTGTTGCCAGCTAATGACAACAGTGCGTGTGACGCGAATGAGGTGTACAGACAGTATGTAGCGTGCTGTACTAAACTGGCAAGGAAAGGAGTTATAGGACCCACACATTTCCCGAGATTGGTCAGGACTGTATTCGGAGGGACTGTAGGCCCAAACAATGTGACGCTGTCTTCCGGCGAAACGCAACAGGTGTACATCGGCATCCGATCGAGGAACGCACAGAATCGAACTAATCCTACTACAGGTCCATCATCACCCATATTGAAGGCACAGCTGACGAACAAGGCGGCGGCGGAAGCGAAACCCGTTGTCTCCCAAACACCAGTACAGTCGCAGCCGCAGCCAACAGTATCGCACCCGCATCTCTCTCAAGCGCTGGAGTCGAGCCCGTCGAACACTACGCTTATAAAGCACCTATTAGCGCATAAAGTAAGCCCCGCGTTACAGCAACCCCAAGTGGCGCAAAGACAGCAAAGCCAACAAAGAGGCCCGGCGACACCAACGAGTGTTGTTGTACAAAATACTCAGGTAATGGATGTGGACCCCGAAGCTTTGATCAAATGTACTACGATAACACCTGGTGGTGTTGCCAGTAGCACGCCTACAGAAAAGGTTATTATGAATCCTCAAGAAGACCTTCTTGTACCGAAAGAAGAGCCTGTTCAAATACAGATCGATGAACAAGCACAACTTACTATTAAATCAGCTCAAAACAAAATGCTAGCAGATTTACTGAAGAAAAATTCTAACCCTCCACTGCAAGTCGTTCAAATGGGCCCACAAATCAATGCCCCAACCATACAAATAACAGAAACTGGACAAATCGTTCAGGTCAAGTCAGAATCGACCCCAGTCATCCAATTCAACGCCGACGCAGGCATAGTAACACAAGGAAACCAATACTTCCAAATAAAGAACGAGCAGGGTCAATTAATTCAAATTAAGAACGAACAAGGTCAAATCATTCAATTGAAGAGTGATCAATTACAAGCGCCTATCTTGCAGTACAAGAATGAGCAAGGTCAATTAGTTCAGGTCAAGACTGAAGGTCAGTTGCAGGTAAAAAACGAGAAGGATGTAGCTGAGAATGTGGTTACTGATCATTCTTATACGGAACCGCCGGCTAAGAAGGTCAAGGTTGAAGAAAAGCCCGCACCACCTCAGGAGAGCGTGTCAAAGACTGCGGCGAACCTCTACGCAGCGCTCGCGGCTTCCGCATTGGAAGATGAAGAAGATTTGATGCCGCCGAAGCAAGAATCAGTGGATATAATACAACCATCAGTATTAATGACCGCTGGCAGCGGTGACAATCCTTCTGTCATTATTCAGGAACCTATTCTACAGGTACAACAACCTACTATGTCTGTCCAGCAACCGACAATGCAAGTACAGCAACCGACGCTTCAAGTTCAGCAACCAACACTGCAGGTACAACAGCAAGCCTTGCAGATGCAGCAACCAATGCTACAAGTACAATCCATGGATGTTCAAAACATTATCGCATCGCAATCCGGACAACTTATTCTGCAAGAAAAGACAATATCGACTCAACCATCGTTTATGCAACAACCAATGCAAATTATAGCTACACCAAGTAATTCTCAAGGTGGTATAAGCTACATCGCTCAGAATATACCGGGCAACATGATGCAGAAAACTATTATTATAGTCCAAGGGCCGACCGGTGGTGGGCCTCTCACGTTGACGGTGAACAACCCAGGCGGTCTGGATGAGGCGACGCTAAACAGCCTTATTACGCAGGCAACAGAGGCGATAACGCAACAGCAAATTATACAGAACACGGGTGTGATACAGTCGACACAGAGGGTGTTGAGTCAGCCTGCGTTAGTGAGCACGTCTCAAGCGCTCACGATGGTGAAGAATGCCCTCGCTCAGAATGCCCCCCAAATTACTCCTAGTCAGCAACCAATAATAACGAACCAGCCACAACCGCATAAGGCTCAGATAGTCAACACGCAACAGACGCAACAAATAGTGGTGACTCAGAAGCAACCGCCCGCGCTTATTAGTACCTCGAATAGCAACCAGATTGTAGGCGGCAACCCGCAGATAATACAAGGCAACCAACAACTCCTTCAAGGCAGCCAGCAAATAATAGCTGTATCCAACAACCAGCCGATAATAATGAACGCGCCGATGAAAGGCAGCGTGCATCGCGTGGTCCAGCAACCACAGAGGAGTCCCGTGGTCACCAGCGTGCAGAGCAACCAGGTGTCTGTGGTCAGTGAGGCCAAGACTAGCGTTATACAAACTACTGCGTCGCAGAAGGCAGCGCAGCAACCGGTGATGAGACAAGTCATCACCCGTCAACCTGTCATGGTGGGCAACACGAAGATCGGTGACAAAGAACTCGTGGTCAACCAACCTGTGCCTGAGAAGCCGCCCATACCAAAGCCGTCGGCCACCCCGCCCCCGACGCCCACACCGCAGACCGCGCAGCCAACGTCCGCACAGGACGAAACGCCCTGGATCTGTCATTGGAGGGGATGTGGCAAGGAGACAAGAAAAGAAATATCGAATTATATCGCGAATTTATCCCGTTTGTCGTCTAAAATATGTGTTAGAAGTGGTTATGATAGCAGCCTTACTATCTGTTACGCCAACACCATTCCCCGTACCCGCAGAACATTCACCTGTGCGTCGGAGGTGTTCTACAAACATTTCAAAGCGTGTTAG
- Protein Sequence
- MAKQQINTKSSNYAKDKEAFLKDLKQFNESKNVPTKVPIVNGIEIDLYLFYTLVQQRGGLGKVNQNDTWESFLRPLRLPHPCINGSTLLRRIYGTYLEKYERAKGPPGRDEDNDFDEELSRRGRGGNIPRMSFGGGTYISASGEALRTGSRVAAASERLALSLLSPMPNEQDFAVNVCTVLAADHSNRLPLSTTPHILDFLLAHAGVYNHSSLRDTIGRSYYEARGRYPDDFWAMRAGGGGAKELADETKFMQPGVEQPDLIVQARAAHNTLTDCLMNEAELEEVIAEKVVEDDIFEDWMVEPAEESLLFAPELPGGASCVYTQRVLQIASIVRSLSFHEENVQYLSKNTTLIRFLLLCANSWVGTLRQSGLDTLGNVSSELIIKDPATCLISRHVISTIQAALASQDRARVLAALELLNKLAQNEVNEDALLKSLEAKIYQDVCSLLTLRDIMVLVCTLECVYALTSLGDRASEAVARVPGLISTLVSLVTVEAQSYGPRACILMRVVETVSGPSALAAHQDHERQLHQHQQHIFNIIYHPNYLPKNCTTQAQTPVKPVEQQAAIPTPAVSALAPVSSIQQSHLQQRTVQENEHFAQAWLRSAYEVLPANDNSACDANEVYRQYVACCTKLARKGVIGPTHFPRLVRTVFGGTVGPNNVTLSSGETQQVYIGIRWRNAQNRTNPTTGPSSPILKAQLTNKAAAEAKPVVSQTPVQISDELPESIRDHASLRDTIGRSYYEARGRYPDDFWAMRAGGGGAKELADETKFMQPGVEQPDLIVQARAAHNTLTDCLMNDAELEEVIAEKVVEDDIFEDWMVEPAEESLLFAPELPGGASCVYTQRVLQIASIVRSLSFHEENVQYLSKNTTLIRFLLLCANSWVGTLRQSGLDTLGNVSSELIIKDPATCLISRHVISTIQAALASQDRARVLAALELLNKLAQNEVNEDALLKSLEAKIYQDVCSLLTLRDIMVLVCTLECVYALTSLGDRASEAVARVPGLISTLVSLVTVEAQSYGPRACILMRVVETVSGPSALAAHQDHERQLHQHQQAQTPVKPVEQQAAIPTPAVSALAPVSSIQQSHLQQRTVQENEHFAQAWLRSAYEVLPANDNSACDANEVYRQYVACCTKLARKGVIGPTHFPRLVRTVFGGTVGPNNVTLSSGETQQVYIGIRSRNAQNRTNPTTGPSSPILKAQLTNKAAAEAKPVVSQTPVQSQPQPTVSHPHLSQALESSPSNTTLIKHLLAHKVSPALQQPQVAQRQQSQQRGPATPTSVVVQNTQVMDVDPEALIKCTTITPGGVASSTPTEKVIMNPQEDLLVPKEEPVQIQIDEQAQLTIKSAQNKMLADLLKKNSNPPLQVVQMGPQINAPTIQITETGQIVQVKSESTPVIQFNADAGIVTQGNQYFQIKNEQGQLIQIKNEQGQIIQLKSDQLQAPILQYKNEQGQLVQVKTEGQLQVKNEKDVAENVVTDHSYTEPPAKKVKVEEKPAPPQESVSKTAANLYAALAASALEDEEDLMPPKQESVDIIQPSVLMTAGSGDNPSVIIQEPILQVQQPTMSVQQPTMQVQQPTLQVQQPTLQVQQQALQMQQPMLQVQSMDVQNIIASQSGQLILQEKTISTQPSFMQQPMQIIATPSNSQGGISYIAQNIPGNMMQKTIIIVQGPTGGGPLTLTVNNPGGLDEATLNSLITQATEAITQQQIIQNTGVIQSTQRVLSQPALVSTSQALTMVKNALAQNAPQITPSQQPIITNQPQPHKAQIVNTQQTQQIVVTQKQPPALISTSNSNQIVGGNPQIIQGNQQLLQGSQQIIAVSNNQPIIMNAPMKGSVHRVVQQPQRSPVVTSVQSNQVSVVSEAKTSVIQTTASQKAAQQPVMRQVITRQPVMVGNTKIGDKELVVNQPVPEKPPIPKPSATPPPTPTPQTAQPTSAQDETPWICHWRGCGKETRKEISNYIANLSRLSSKICVRSGYDSSLTICYANTIPRTRRTFTCASEVFYKHFKAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00326866;
- 90% Identity
- iTF_00326866;
- 80% Identity
- iTF_00326866;