Cros005821.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- nfxl1
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000010.1:109302-111776[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2 3.5e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 21 0.01 1.9e+02 3.2 0.3 4 10 169 175 168 176 0.97 3 21 3.1e-07 0.0055 17.6 15.9 3 19 186 202 185 202 0.95 4 21 1.8e-05 0.33 12.0 10.9 3 19 239 255 237 255 0.92 5 21 0.26 4.6e+03 -1.3 1.4 5 10 279 284 279 284 0.94 6 21 2.1e-10 3.7e-06 27.8 13.6 1 19 290 308 290 308 0.99 7 21 1.8e-07 0.0033 18.4 15.6 3 18 345 360 337 361 0.86 8 21 0.2 3.6e+03 -0.9 0.8 1 5 370 374 370 379 0.79 9 21 1 1.8e+04 -3.1 1.8 5 10 384 389 384 389 0.93 10 21 6e-06 0.11 13.5 18.3 1 18 395 412 395 413 0.97 11 21 1.4e-08 0.00025 21.9 17.3 1 19 422 440 422 440 0.99 12 21 0.00044 7.7 7.6 7.2 10 19 489 498 487 498 0.91 13 21 1.8 3.2e+04 -4.0 0.3 9 12 500 503 500 503 0.78 14 21 0.01 1.8e+02 3.2 4.6 4 11 510 517 508 518 0.88 15 21 0.31 5.5e+03 -1.5 3.5 14 18 547 551 547 552 0.87 16 21 0.13 2.3e+03 -0.3 0.4 7 12 567 572 567 579 0.83 17 21 0.0031 55 4.9 6.2 1 11 588 598 582 599 0.91 18 21 0.84 1.5e+04 -2.9 1.5 15 18 613 616 612 617 0.82 19 21 0.00036 6.4 7.8 15.4 1 18 628 645 628 646 0.89 20 21 2 3.5e+04 -6.5 3.4 9 13 652 656 652 656 0.71 21 21 5.1e-06 0.09 13.8 11.9 1 16 687 701 687 706 0.94
Sequence Information
- Coding Sequence
- ATGGCCCGGCGCTACCGCGATGCGGCTGCAAAACTGCAGCAAAATGTGCAGAAACATTTGCAAGGGATGAAGGAGCTGTCTTCGTCGGAAGACGAGGAGCCATACGAGTCCAGCGTGCTGTCCGGCGTGCTGCAGAGCTACgtgcgcggcggcggcgacgcGGGCGCCCTGAGCCGCACGCGCCACATGCTGGAGGAGGCGGCCGGCGGGCGCGCCGTCACCTGCCTCGTGTGCATCGCCTCCATCAAGCGCGCGCACGCCATCTGGACGTGCGACCACTGCCACTGCTACTTCCACCTCTCCTGCATCCAGAAATGGTCCAACGACAGCATCAGCCTCCGGAGCGAGGAGACCCGAGGCCCCATCGCCGTGTTCAAGCCCAAAAAGATCGAGTGGTGCTGCCCGAAATGTCGTAATTCGTATACCAAAGAAGAGATACCGCGGAAGTACCGCTGTTTCTGTGGCAAGGCTGATGACCCTCCCTTTCATCCTTGGTTGATTCCGCACACCTGTGGAGAAGTATGCGGAAAGAGATTGTCGATGGGTGACAATTGTAAACATAAGTGCTTACTACTGTGTCACCCTGGGCCGTGTCCTCCCTGCCCACAAACTGTCAATGGTGTGTGTTTCTGTGAGAAGGAACGGAAGAGGGTTCGCTGCAGTGCAGCCAAGTGGTCTTGTGCACAACAGTGCAAAAAATTGCTCTCCTGCAAATCTCACAAATGTGAGAATATTTGTCATCCGGATGCATGTCCCGCCTGCAGCTACACAAGTGTACAGTCATGTTTGTGTGGTGCTGAGAAGGCAAAACGACCATGTAATGATCCTGTGTGGCGATGCCAGAAGCTCTGCAACAAGCCGTTTTCCTGTGGCTATCACAAATGTGAACAAGTCTGTCATTCTGGTGACTGTGGTACCTGTCCTAATTCTGGCATGATGTCCTGCCCTTGTGGAGCTAACCAAAGATTTGTGCAGTGTCCTGATGTCATGGAGACATGCATGGGGACATGTGGTAAAACTCAGGAGCTCTGTGAACACACTTGCCCAGAAAAATGCCATAAGGGTGCCTGTCCACCCTGTCTAGTGCTGATTGAAAAGCAGTGCCAGTGTGGCACTCATACAAGATCTCTACCTTGTAGTAAAGAATATAAATGTGAATCAAAGTGCAAGGGGATCAGGCCATGTGGGAAGCATGGCTGTGCTCGCAAGTGCTGCAATGGCAACTGCCCTCCTTGTGAAAAAGTCTGTGACAAACCTCTCCAATGCGGACGCCACAAATGCACAACAGTCTGCCATCATGGTCCTTGCTATCCGTGCCCGAGAGAATCTAAAGTGACTTGCCGCTGCAAGGAGACATATGTCACAGTACCATGCGGCAGAGAGAGGCACACAAAACCGCCCAAGTGCAACCTCCCTTGTAAGATTAAATATAAATGTGGACATGTAGATGAAAATAGGCATTCCTGCCATTTTGGAGACTGCCCTCCGTGTAAAACCATATGCCATAAAGCTTATGAAAAATGTGACCATGATTGCAAAGCAGTGTGTCACGCCTATGTGACAGTTGTATTCAAACAGGTGGAGAAACCTGCAACACCCTGGGAAGTGCAGCCGCCAAAGACTAAAGTGATGACCCTTGATTGCCCGCCGTGCGAGATACCTGTCCCTATTGTTTGCTTTGGAGAGCATGAGACGGCGCAACAGCCGTGCCACGCGGCGGCACGCCGGCCCTGCGGCCGCGAGTGCGGTCGGGAACTGCCCTGCACCAAACACAGATGCAAGCTTCTGTGCCACTTATATGCAGCAGATCCCAATTACCCCAACATTCCTACTTCGTGTGAACCTTGCAACAGAGAGTGTTTGGTGCCGAGACCAGACAGATGCTCCCATAAGTGTGCCAAAGGTGCATGCCACCCTGGCCCCTGCCCCTCCTGTGAAGTGATCGAAAGAATACCATGCCATTGTGGTGTTACAGAGCTGTATTTACGCTGCCGTGAGCTTTCTATGGCCACTGAAGAAATGCTATCATGTAAACAGCAGTGTCCAAAGAATTTGAATTGTGGCCATAGATGCCGGAACCTTTGTCATCCAGGTGCATGTGGGCAGGATCAAATCTGCGCGAAGAAGACTAAAGTTCACTGCCAGTGCGGCAACTTGAAGAGGGACGCGCCCTGCAACGTGGCGCGGCAGGGCAGGGGCCGGCCCGCCTGCGACGCGACGTGCGACCAGAAACGCTTAGCCATGGAACTGGAgagagaaaaagaagaaaagagaCGGAAGGAGATTGAGGAAGAGAAAAACCGAAAAGAATTGGCCGAATATGAGTGGAAGTTGAgtggaaagaaaaagaaatacaaagaGAAGAAAGTTGTGACCAACATGGATGACAGGAATTTTCTACAAAAGTATTGGATTCCTATGATGTCAGTTATGGTTGTTATCATGGCTGctacttattttatattttatgtgtaa
- Protein Sequence
- MARRYRDAAAKLQQNVQKHLQGMKELSSSEDEEPYESSVLSGVLQSYVRGGGDAGALSRTRHMLEEAAGGRAVTCLVCIASIKRAHAIWTCDHCHCYFHLSCIQKWSNDSISLRSEETRGPIAVFKPKKIEWCCPKCRNSYTKEEIPRKYRCFCGKADDPPFHPWLIPHTCGEVCGKRLSMGDNCKHKCLLLCHPGPCPPCPQTVNGVCFCEKERKRVRCSAAKWSCAQQCKKLLSCKSHKCENICHPDACPACSYTSVQSCLCGAEKAKRPCNDPVWRCQKLCNKPFSCGYHKCEQVCHSGDCGTCPNSGMMSCPCGANQRFVQCPDVMETCMGTCGKTQELCEHTCPEKCHKGACPPCLVLIEKQCQCGTHTRSLPCSKEYKCESKCKGIRPCGKHGCARKCCNGNCPPCEKVCDKPLQCGRHKCTTVCHHGPCYPCPRESKVTCRCKETYVTVPCGRERHTKPPKCNLPCKIKYKCGHVDENRHSCHFGDCPPCKTICHKAYEKCDHDCKAVCHAYVTVVFKQVEKPATPWEVQPPKTKVMTLDCPPCEIPVPIVCFGEHETAQQPCHAAARRPCGRECGRELPCTKHRCKLLCHLYAADPNYPNIPTSCEPCNRECLVPRPDRCSHKCAKGACHPGPCPSCEVIERIPCHCGVTELYLRCRELSMATEEMLSCKQQCPKNLNCGHRCRNLCHPGACGQDQICAKKTKVHCQCGNLKRDAPCNVARQGRGRPACDATCDQKRLAMELEREKEEKRRKEIEEEKNRKELAEYEWKLSGKKKKYKEKKVVTNMDDRNFLQKYWIPMMSVMVVIMAATYFIFYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00023391;
- 90% Identity
- iTF_00156876;
- 80% Identity
- -