Cros029880.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- ZFY
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000048.1:510743-514114[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00015 0.012 16.9 0.5 2 21 129 148 128 149 0.94 2 15 0.1 8.4 8.0 0.1 2 23 181 203 180 203 0.94 3 15 0.0019 0.15 13.5 0.2 3 23 210 230 208 230 0.96 4 15 1.7 1.4e+02 4.2 8.1 1 22 233 254 233 254 0.94 5 15 0.00054 0.043 15.2 0.3 1 23 267 290 267 290 0.95 6 15 8e-05 0.0064 17.8 0.6 1 23 296 318 296 318 0.96 7 15 1.8 1.4e+02 4.1 0.3 1 23 352 375 352 375 0.88 8 15 0.00017 0.013 16.8 2.1 2 21 502 521 501 522 0.92 9 15 0.036 2.8 9.5 3.3 2 23 583 604 582 604 0.96 10 15 0.74 59 5.3 1.5 2 21 608 627 608 628 0.91 11 15 1.9e-05 0.0015 19.8 0.8 1 23 654 677 654 677 0.95 12 15 0.00032 0.025 15.9 0.4 1 23 683 705 683 705 0.95 13 15 0.2 16 7.1 0.1 1 23 711 733 711 733 0.96 14 15 0.13 11 7.7 1.8 1 23 739 762 739 762 0.94 15 15 0.0036 0.29 12.6 1.4 2 23 769 791 768 791 0.95
Sequence Information
- Coding Sequence
- ATGCGTTCAAATGTGTGCGAAATcctgacagcggcactgggtgaAAATCATGCGTTGCCGGCAGTGAATGcgGTCGAGGAAGACGCTGCACTGCCCCAAGGGCTCTGTCGTGCCTGTGCCGAAGACGCCATAGCTGCGACCAAGTTCAGGCAGCTGAGTGTCTCGTCCCAACAACACTGGGAACAAGCGGTGGCCGCCATCGTCCAGATACACGAGCCACGGGACCCTAACGTAACCCTGTACGTTCACTACAACGGTACACACAGTTTGATCAGGGAGGAGCCCGGGAAGATGGCCACGAGAGACGATGCCGTCGACAAGTTGAATctaaaagtaccaaaaaaaaaagtcaaaaggGCTTACAAAAAATCTGCGCTGAAGTGTCGGTGTCCGGATTGCGGGAAAGATTTTCCTGTGGCACACAGTTTGAATGTACATTTGAAGAATACGATGAAACGAGCGTGCGTGCTTTGCGGACAGGTTCTCGAGAGGCATAAGCTGGCTGATCATTTGGCTAAAGTGCATGAGAAAGTGTTCGTTGAGTGCGCATATTGTTTCAAACTTTTTGAGAGTGACGACGGCTTGCAGCAGCATTATGGTACCTATCACAACAGGCTCTCCTTCGGGTGTCAGATTTGCGGACGAGGATACACTAACGACAGAGCTTTGCGCTCGCATATGTATGCCCACACCCTTTTCCATTGCGTGTCCTGCAACCAGAGCTTCGAAAACCGGAGGTGTTTCAAGCATCATCAGAAGAAATGCAAGACGTCCGCGTTCGAATCAGCATCCTCTCTGTACACCTGCGACTATTGCGGCAATGTGTATGACAAGAAACCGTCTCTCCGCATCCATATAATACAGAAGCATTTGAACGTGCTACCCTACGTTTGCGACACGTGTGGCAAAAGGACCTCCACTTTAGCACACTTGAGGTCGCATGAGGCCGTACACACAACACAGAGGAAGCTCTACAAATGCTCCTGTGGGGCTGAAATGAGGACTGAACTGGGATACCATCTGCACCAGCGGATACACACCGGGGAAAAACCGTATGAATGTGAAGAGTGCGGCGATAGGTTCCTCTCAGCTTCAAGACGTCTCGATCACATCAAGAGACGCCATAGAAGTACTAAAGATATGCCGCATGGTTGTGAGATGTGCCATGCGCGGTTTATAACGGACGAAGCGCTCTGCCCGAACGGCGTCTGTGCATCATGCACTACCAACGCCATCGCCGCTCAAGAATTCAGGTCCCTCGTCACAGACTCTTGCAATATGTGGTCCTACGCCGTCGACCAACTCTCCACAATACCCTCAAACGAAGAAGAAGACGTGAAATCCCTCTGCGCTTTCCTGAGACCAGACGATTTCACCATACAGATCGCTAAAGACTTCTCCAGCAGCGACAAAACTACTCCTTTAAAcagattaaaaagtaaaataaacaagaaGAACAGCGATGAAAAAAGACCAAGAGTACATAGGACAGGTGCGCCCTGCAAATGTACTGATTGTGGCAAACAATTTGTCAGCCCTTACTATctaaaaatacatttcaaaaACAGCGGACAAAAGGACTCTTGTATCACATGTGGCTCTATTTTGTTTCGTGGTAAGAAGATGAGGGACCATTTGATCAAAGTGCACAGGGAACCTGCAATTTTGTGCAGCCAGTGTCCAGCTATTCATAATAATGAGATCGACGCTGAAAAACACGAGAAAATGGCACACAAAAACGGACTGACTTGCTGCGATTGTGGACGCACGTTTTTGAGGCAATCTTCTTTTGATACCCATTCGCAGATGCATGCTGTTCGAACTTGTAGAGCTTGCGGTATTCAATTTACTAATCGCGCGTGTTATAGAGAACACAGGTCTAAATGTGAACCGGATGCAAAGCCAAAGAGAGACACAGTGCCGCGTAACAGACGCTCGAACATACGCGATCCAGCTACCTTCACTTGTGACTATTGCAAAAAGACTTATCGGTCTCTGCCGCAGTTGAAAAATCATATCCTTTGGATCCACATGAACGTTCGCCCGCACCAGTGCTCGTGGTGCGGGAAACGTTTCTACACGCCCGCGCGTTTAGCTGAGCATACCGTGGTCCATACGCGGGAAAGGAATTTCGCCTGTGACATTTGTGGTGCCAGATTAGTTTCCAAAATGGCGGCTGTTTATCATAGGCGAAGGCACACGGGCGAGAAGCCCTATAGGTGCGAGGACTGTGGTGATTGCTTCATTTCGGCTTCTAGAAGGTCTGAACATGCGAAGCGGAAACACGGGAAAGGGCGTAGGTTGCCGTGCACGCAGTGTTCCTCTACTTTTGTGAGGATACATGAATTGAAGAAGCATATAGAGAAGATGCATGGTAATGTGATCGTGGATGTCATTTCTTTGACACGAGGTGCATAA
- Protein Sequence
- MRSNVCEILTAALGENHALPAVNAVEEDAALPQGLCRACAEDAIAATKFRQLSVSSQQHWEQAVAAIVQIHEPRDPNVTLYVHYNGTHSLIREEPGKMATRDDAVDKLNLKVPKKKVKRAYKKSALKCRCPDCGKDFPVAHSLNVHLKNTMKRACVLCGQVLERHKLADHLAKVHEKVFVECAYCFKLFESDDGLQQHYGTYHNRLSFGCQICGRGYTNDRALRSHMYAHTLFHCVSCNQSFENRRCFKHHQKKCKTSAFESASSLYTCDYCGNVYDKKPSLRIHIIQKHLNVLPYVCDTCGKRTSTLAHLRSHEAVHTTQRKLYKCSCGAEMRTELGYHLHQRIHTGEKPYECEECGDRFLSASRRLDHIKRRHRSTKDMPHGCEMCHARFITDEALCPNGVCASCTTNAIAAQEFRSLVTDSCNMWSYAVDQLSTIPSNEEEDVKSLCAFLRPDDFTIQIAKDFSSSDKTTPLNRLKSKINKKNSDEKRPRVHRTGAPCKCTDCGKQFVSPYYLKIHFKNSGQKDSCITCGSILFRGKKMRDHLIKVHREPAILCSQCPAIHNNEIDAEKHEKMAHKNGLTCCDCGRTFLRQSSFDTHSQMHAVRTCRACGIQFTNRACYREHRSKCEPDAKPKRDTVPRNRRSNIRDPATFTCDYCKKTYRSLPQLKNHILWIHMNVRPHQCSWCGKRFYTPARLAEHTVVHTRERNFACDICGARLVSKMAAVYHRRRHTGEKPYRCEDCGDCFISASRRSEHAKRKHGKGRRLPCTQCSSTFVRIHELKKHIEKMHGNVIVDVISLTRGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155586;
- 90% Identity
- -
- 80% Identity
- -