Acra000475.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Archips crataeganus
Gene Symbol
Zfx
Assembly
GCA_947859365.1
Location
OX402073.1:655161-660706[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00012 0.0079 17.2 0.6 2 21 111 130 110 131 0.93
2 16 0.0099 0.67 11.1 0.6 3 23 164 184 162 185 0.94
3 16 0.0049 0.33 12.1 0.1 3 23 192 212 190 212 0.96
4 16 1.7 1.1e+02 4.1 7.7 1 21 215 235 215 236 0.95
5 16 0.00052 0.035 15.2 0.3 1 23 249 272 249 272 0.95
6 16 7.9e-05 0.0053 17.7 0.5 1 23 278 300 278 300 0.96
7 16 4.1 2.8e+02 2.9 0.3 1 23 334 357 334 357 0.74
8 16 0.0024 0.16 13.1 0.3 3 23 367 388 366 388 0.92
9 16 0.00013 0.0085 17.1 1.4 2 21 514 533 513 534 0.92
10 16 0.012 0.84 10.8 0.5 2 23 595 616 594 616 0.95
11 16 0.57 38 5.6 0.9 2 20 620 638 620 640 0.91
12 16 9.1e-06 0.00061 20.7 1.1 1 23 666 689 666 689 0.95
13 16 0.0003 0.02 15.9 0.4 1 23 695 717 695 717 0.95
14 16 0.99 67 4.8 0.1 3 23 725 745 723 745 0.97
15 16 0.094 6.4 8.1 1.9 1 23 751 774 751 774 0.94
16 16 0.0031 0.21 12.7 1.5 2 23 781 803 780 803 0.95

Sequence Information

Coding Sequence
ATGAACCTAAATGGGGTGGTCGAGGAGGACGCTGCCCTGCCTCAGGGCCTCTGTCGAGCCTGTGCCGAAGACGCCATAGCTGCCACCAGGTTTAGACAGCTCAGCCTCTCGTCCCAGCAACACTGGGACCAAGCCGTCTCCACCTTCGCCCAAATACACGACCCAGAAGACCCAAACGTAACCCTATACGTCCACTACCATGGCACCCACACCATATTCAGGGAAGAACGCGGAAAGATGACCACGGCGACCGATGTTGTCGACAGTTTGAATCTGAAACCAAGAAAGATCAAAGTCAAACGGACTTACAAGAAACCAGCGCAGAAATGTCGGTGTCCTGATTGCGGTAAAGATTTTCCAGTAGCGCACAGCTTGAACGTGCATTTGAAGAAAACCATGAAACGGGCGTGTGTTATTTGCGGAGAGGTGATGGAGAGGCATACATTGGCTGATCATTTAGCTAAAGCGCACGAGAAGTTGTACCTTGACTGCGAGATGTGTTTCAAACTGTTTGAGAACGAGGACGGCTTGAAAGAGCATTACGCAACGCATCACAGCAAGTTTTCCTTCGGCTGCCAGATCTGCGGACGAGGATACGCTAACGACAGAGCGTTGCGCTCCCACATGTACGCCCACACCCTTTTCCACTGCGTATCATGCAACCAGAGCTTCGAAAACCGGAGATGCTTCAAGCATCACCAGAAGCAGTGCAAATCAACGGCGTATGAATCAGCAACATCCCTTTACACTTGCGACTACTGCGGCAATGTGTACGACAAGAAACCTTCTCTGCGCATCCATATAATTCAGAAACATCTAAACGTCCTCCCGTATGTTTGTGAAACGTGCGGCAAAAGGACCTCGACATTAGCACACTTGAGATCCCATGAAGCTATCCATACTACACAGCGAAAGCTTTACAAGTGCGAATGTGGGGCGGAAATGAGAACTGAGTTAGGATACCATTTGCATCAACGAATACATACAGGGGAGAAGCCATATGAATGTGAAGAATGCGGGGATAGATTCCTATCTGCTTCAAGACGTTTGGATCATGTGAAGAGGCGGCATAGGAGCACTAAAGATATGCCGCATGGCTGTGAGATGTGTCACGCGCGGTTCGTGAGGCCGTTTGAGCTTAAAAAGCATTATGCTGCCGTGCACGACTCTGTGGTTGAGGTGTTGCCGGCTAAGAAGAGGCTTAGGAGGCGGATATCGGATGAAGCGCTCTGCCCCAACGGCGTATGCGCAGCTTGCACCACCAACGCCATCGCCGCCCAAGAGTTCAAGTCCCTCGTCACAGACTCGTGCAAAATGTGGTCGTACGCCGTCGACCAACTCTCCACAATACCCGCAAACGAACCACCAAACGTAAAATCCATCTGCGCTTTCCTACAACCAGACGATTTCACCTTACACATTGCTAAAGACTTTTCTTGCAACGATAAAACAACTCCCCTAATCAGGTTAAAAACCAGGATTAACAGGAAGAAAAGCGACGAGAAAAGACCTAGAGTACATAGGACAGGCCCGCCCTGCAAATGTACGGATTGCGGAAAAGAATTCATTAGTCCTTATTACCTCAATGTCCATTTCAAAAACAGCGGACAAAAGGACTCCTGCATAACTTGTGGGGCTATTTTACTACGCGGCAAGCAAATGAGAGACCATTTGGTCAAAGTGCATAGGGACACTGCGTTTTTGTGCAGCCAATGCCCAGCTATTCACACGAATGAGATCGACGCTAAGAAACACGAGAAAAATGCACATAAAAACGGGTTGACTTGCGGCGATTGCGGCCGTACGTTCTTGAGGCAAGCGTCTTTCGATACGCATTCTCAAATGCATGCTGTCAGGACTTGTAGGGCGTGCGGTATTCAGTTTACAAATCGAGCTTGTTACAGAGAACACAGGGCCAAGTGTGAGCCGGATGCTAAACCGGATAGAGACACGGTGCCGCGTAACAGGCGCTCGAACATACGCGACCCAGCTACTTTCACGTGTGATTATTGCAAAAAGACTTATAGGTCCCGACCGCAGTTAAAAAACCATATTCTTTGGATCCATATGGACGTCCGACCGCACCAGTGCTCCTGGTGTGGCAAGCGTTTCTACACGCCGGCGCGTCTAGCTGAACACACCGTAGTCCATACGCGGGAACGGAATTTCGGCTGTGACATTTGTGGCGCGAAACTCGTTTCCAAAATGGCCGCCGTTTACCACAGACGAAGGCATACCGGCGAGAAGCCGTACAAGTGCGAGGACTGTGGCGATTGCTTCATTTCAGCCTCTAGGAGGTCTGAGCATGCCAAAAGGAAACACGGCAAAGGTCCCAGGCTGTACTGCACGCAGTGCTCGTCTAGTTTTGTAAGAATACACGAATTGAAGAAGCACATAGAGAAGGCACATAGTACTAATAATCTCATGATTACAGATGTCGTATCTTTATCCCTTAATTCGCCAGGCAAAAACAAAATGTAA
Protein Sequence
MNLNGVVEEDAALPQGLCRACAEDAIAATRFRQLSLSSQQHWDQAVSTFAQIHDPEDPNVTLYVHYHGTHTIFREERGKMTTATDVVDSLNLKPRKIKVKRTYKKPAQKCRCPDCGKDFPVAHSLNVHLKKTMKRACVICGEVMERHTLADHLAKAHEKLYLDCEMCFKLFENEDGLKEHYATHHSKFSFGCQICGRGYANDRALRSHMYAHTLFHCVSCNQSFENRRCFKHHQKQCKSTAYESATSLYTCDYCGNVYDKKPSLRIHIIQKHLNVLPYVCETCGKRTSTLAHLRSHEAIHTTQRKLYKCECGAEMRTELGYHLHQRIHTGEKPYECEECGDRFLSASRRLDHVKRRHRSTKDMPHGCEMCHARFVRPFELKKHYAAVHDSVVEVLPAKKRLRRRISDEALCPNGVCAACTTNAIAAQEFKSLVTDSCKMWSYAVDQLSTIPANEPPNVKSICAFLQPDDFTLHIAKDFSCNDKTTPLIRLKTRINRKKSDEKRPRVHRTGPPCKCTDCGKEFISPYYLNVHFKNSGQKDSCITCGAILLRGKQMRDHLVKVHRDTAFLCSQCPAIHTNEIDAKKHEKNAHKNGLTCGDCGRTFLRQASFDTHSQMHAVRTCRACGIQFTNRACYREHRAKCEPDAKPDRDTVPRNRRSNIRDPATFTCDYCKKTYRSRPQLKNHILWIHMDVRPHQCSWCGKRFYTPARLAEHTVVHTRERNFGCDICGAKLVSKMAAVYHRRRHTGEKPYKCEDCGDCFISASRRSEHAKRKHGKGPRLYCTQCSSSFVRIHELKKHIEKAHSTNNLMITDVVSLSLNSPGKNKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00325766;
90% Identity
-
80% Identity
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