Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000014.1:3584717-3605651[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.1 2.5e+02 3.4 0.2 1 23 90 113 90 113 0.93

2 18 0.64 52 5.5 0.1 2 23 117 138 116 138 0.95

3 18 0.19 15 7.2 0.2 2 23 142 164 141 164 0.92

4 18 0.91 73 5.1 1.1 3 23 399 420 398 420 0.97

5 18 0.041 3.3 9.3 0.0 1 20 428 447 428 449 0.95

6 18 0.027 2.1 9.9 1.4 3 23 460 480 459 480 0.96

7 18 9.6 7.7e+02 1.8 0.3 1 23 496 519 496 519 0.75

8 18 0.0024 0.19 13.2 2.5 1 23 528 551 528 551 0.94

9 18 0.24 20 6.9 0.3 3 23 628 649 626 649 0.85

10 18 9.8e-05 0.0078 17.5 1.1 1 23 683 705 683 705 0.97

11 18 2e-05 0.0016 19.7 1.5 1 23 712 734 712 734 0.98

12 18 0.00012 0.0094 17.3 2.3 1 23 739 761 739 761 0.96

13 18 0.00024 0.019 16.3 0.3 3 23 769 789 767 789 0.98

14 18 2e-06 0.00016 22.8 1.2 1 23 795 817 795 817 0.98

15 18 0.00043 0.034 15.5 2.6 2 23 824 845 824 845 0.98

16 18 0.0004 0.032 15.6 0.4 2 23 854 876 853 876 0.97

17 18 0.0065 0.52 11.8 0.4 2 23 882 903 881 903 0.95

18 18 0.14 11 7.6 4.2 1 23 909 932 909 932 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.1	2.5e+02	3.4	0.2	1	23	90	113	90	113	0.93
2	18	0.64	52	5.5	0.1	2	23	117	138	116	138	0.95
3	18	0.19	15	7.2	0.2	2	23	142	164	141	164	0.92
4	18	0.91	73	5.1	1.1	3	23	399	420	398	420	0.97
5	18	0.041	3.3	9.3	0.0	1	20	428	447	428	449	0.95
6	18	0.027	2.1	9.9	1.4	3	23	460	480	459	480	0.96
7	18	9.6	7.7e+02	1.8	0.3	1	23	496	519	496	519	0.75
8	18	0.0024	0.19	13.2	2.5	1	23	528	551	528	551	0.94
9	18	0.24	20	6.9	0.3	3	23	628	649	626	649	0.85
10	18	9.8e-05	0.0078	17.5	1.1	1	23	683	705	683	705	0.97
11	18	2e-05	0.0016	19.7	1.5	1	23	712	734	712	734	0.98
12	18	0.00012	0.0094	17.3	2.3	1	23	739	761	739	761	0.96
13	18	0.00024	0.019	16.3	0.3	3	23	769	789	767	789	0.98
14	18	2e-06	0.00016	22.8	1.2	1	23	795	817	795	817	0.98
15	18	0.00043	0.034	15.5	2.6	2	23	824	845	824	845	0.98
16	18	0.0004	0.032	15.6	0.4	2	23	854	876	853	876	0.97
17	18	0.0065	0.52	11.8	0.4	2	23	882	903	881	903	0.95
18	18	0.14	11	7.6	4.2	1	23	909	932	909	932	0.97

Sequence Information

Coding Sequence: ATGATTTCTGAAGAATCTGACGATGAACCCCTGGCGACTTTAGCGGCTGCAAAGAAGTTGAATTTGGGGAAATATGCAGACGAACTTGAAATTCTGTCCAAAGATGAAGCGGCCCagagaaaaaagaagaaaattgtGCCCCAGAAGAAAATGTCAGCTGTGACGATTAAAATTAACCGTGCCTTAAAGGCTGTGATCAACCCGCCGGTCATCGAGCGGCCTATGGACGTCTGGCTCTACCTAAAAGACCTAAATCCAACAGGGCCGTACAGTTGTTTACTTTGTTCTAATTGGTTCATTAACAGGGGTAAACTGATCGTACACTACATGTTGAATCACAAAAAAGACTACTGCGGGATTTGCAGATACTTCGTACCTGATAGAGAATCCTGGTTTGCTCACCTGAAATTCCACATACCATGGCCTTGTTCTCAATGCATAAAAAACTTTGAAACTGAGGGTGAGCTCAGGCAACATTTCAGCTCAGAACACAACTTGGTGCACTGCCGACTGTGCCACTTTCGAGTAGCTGACGATGATCAGTACAACACTCATTTGATACAAAAACACAGTGTCTCCAACTTAACAAGCAAAGATGAGGAGTTATGGGAGTTTGAGTATGAAGGCAGCAACAAGTTCCTCTGCTTGCTCTGCTCGAAGTCAAATAATCTATGTGACATGTTCTTTAACCATTACATGGGTTATCACCATTTCACACTCAAATGTCTCAGCTCTTTACTGGCGGGGAGAGACCTACCATTTTTGGTCAATGGTGCTGACATTAGTCCGGCATTTATTGAAGGTGAATTAAAAGACCACAGCAAAATTGGTTATGTTGACTTGGATAGCAAAGCTCCTGAAACAACAAATGAAGAAGAACATAGTGAGAGTGAAACGCAAGATCTTCTAAATGTCCTTATACCGGAAATTAAACAGGAAGCTATGAGTGAGGAAGATGTACCAACTGATAAAGAAAAAGATAAACAGAAGAAAGTAAGAGATGAAAATGATATTGCTAATATTTACAAGGGTGATGAAGATTTTGATGTTACATTAACAGAGTTGATCATACTAGAGAAATGCTACTTTGAATATGTGAAGCAGACATTAAATGACATTAACTCTAATTTGGTTCCAGTGTCTGGTATAGATTACTCTGCCTTGAAGCCTGACTTACCGACAACAGATATATTATGTTCACTCTGCAAGAACAAGTACAATAATATTCAGTCATTTATTTCACACAtgataaaaaatcatttgatgAAGACAGCACCAATCTACTCATGTCGAGTTTGTGCGACTACATTTGAAAATCAGGCAGAGTTGGACAGTCATATTACAGAAGAGTTGGGGGACTTTGATGATCTGTGGCTATGTCAATTTTGTGACAAAGAGTTTGACAACAGAGAAACAACACGGCGACATTTGACAGAGCACTGGAGTGCCATGGAGTTTGATAACTGTTACAGTCCACATTTgggtttcaaatgtaaattttgtCCGACACTCTTTTGGAATGAAATAGACAGAGAGGCACATCAGGTTCGCGTACATTTCAACCAACACAAGGACCAGTTTTACAAATGTGAAGATTGCTCTGAAACATTCAGTGATAAGataTTCTTTATTCACCACTACATAGAGAAGCATCAGTCTTCTCTCTCCCCCTCTTACGTACTCAAATGCAGCATCTGCTGCATAGTACAGTCCAATGTGGATGAAATGAGAACCCACTTTGAGGCCAAACATCCAGATGCTAGGAAAATATTTTGCTCCTTGGACTCCTGCCAGTACCGACCGCTGAGCCATAGAAAATCTTTCAAGTTCCATTTAAGGTCGGTGCATGATCCTACAGTGCGGCCCCAGCGCTCTGTAAATTGCACTGTATGTGGCCGAGAGTTTGTTAGCTCGCGCGCCTGCGGGGCGCATATGGCACAGGTTCATGGCCCGGGCAAGTTCAAGTGCAAGCTGTGCCGGGAAGTCATGCATACATTGGATGAGAGGAAATTGCACTATCTCCTGCGGCACCCGGGGCGCCACCCGTTCGAGTGCGCGGAGTGCGGCAAGTCCTTCCAGTACAAGTCGTCACTCTACATGCACAAGCAGGAACACTCGCCCAACAAGCAGAGCTACACTTGTTCCTACTGCTCCAAAGTATTTGCGAAACGCGACTCGTTCCGCGAGCACCTCCAAATCCACGAAGGCCCGCGGCACGCGTGCTCCTACTGCCCGATGCGTTTCGTACAACGCTCGAACATGCTCAGGCACGAGAGGCGACACACGGGGGAGCGGCCCTATGGGTGCCCGCACTGCCCGCGCACCTTCGCAGACAAGGGCGCAGCTACGTCGCACGCCAGAACACATTCCAAGGAGGCATCCTACGCTTGTGTTTACTGCGGACAGACGTTTGTGCAGAAATCCAAGCTGACATATCACATCAGGAAACATACGGGGGAGAATCTAGAGACTTGTACGATTTGCTCAAAGCTGTTCACCAGCGCTTGTTCTTTGCGGGAACACATGAAGATACATCTGGCGAAGAAGAAAGAGGCTGTGCAGTGCCCTTTGTGTGACAAGAAATACCAAGACGAGCGTTACATGCTGCGTCACCTCCGGACGGCGCACACCCGCACACAGATGCCGTGTCCGCTGTGTGACAAGACGCTCACAAGCATGACTGGCTTGCGACACCACGTGGTCTCCCACAGCGGACTCAACACCTTCCGGTGTAAATGCTGCCCAAAGTCCTACGCTGTGAAGCGGTCCGTCTTAAAGCATCTAAGGAAACGCCACGGTATGAAAGGGACGGAGATAAACATCAAGGACTACTTCAAACGAATAGACCCGCGAGACTGTAACCTCGGGCTTGATGAAGAAGCCATGACACGAATATTCGGGCCACCGAAGAAAACTATGAACGACGTTCTCATTGGTGACTTTGTGACgtttaacaaaaatttgaatCTAGCCAACCTACAGAAAGATGGTGACGATGACGACAATGACGACGATGGGAACGACGACGACGAAAATGACGATGGTAATGACGACGAACATTCCGATAACGATGAGAACGAGAATGAGAGTAATGAAAAAGTTGAGCAAATCAAAGAAGTTATTATAAAAACAGAGAAGAGGGATGGTGATGAATTAGAACCCACTGATTTTGTTTGTGTTAAGATTGAACCGATGGAAGAGGAAGGTGAACATTAA
Protein Sequence: MISEESDDEPLATLAAAKKLNLGKYADELEILSKDEAAQRKKKKIVPQKKMSAVTIKINRALKAVINPPVIERPMDVWLYLKDLNPTGPYSCLLCSNWFINRGKLIVHYMLNHKKDYCGICRYFVPDRESWFAHLKFHIPWPCSQCIKNFETEGELRQHFSSEHNLVHCRLCHFRVADDDQYNTHLIQKHSVSNLTSKDEELWEFEYEGSNKFLCLLCSKSNNLCDMFFNHYMGYHHFTLKCLSSLLAGRDLPFLVNGADISPAFIEGELKDHSKIGYVDLDSKAPETTNEEEHSESETQDLLNVLIPEIKQEAMSEEDVPTDKEKDKQKKVRDENDIANIYKGDEDFDVTLTELIILEKCYFEYVKQTLNDINSNLVPVSGIDYSALKPDLPTTDILCSLCKNKYNNIQSFISHMIKNHLMKTAPIYSCRVCATTFENQAELDSHITEELGDFDDLWLCQFCDKEFDNRETTRRHLTEHWSAMEFDNCYSPHLGFKCKFCPTLFWNEIDREAHQVRVHFNQHKDQFYKCEDCSETFSDKIFFIHHYIEKHQSSLSPSYVLKCSICCIVQSNVDEMRTHFEAKHPDARKIFCSLDSCQYRPLSHRKSFKFHLRSVHDPTVRPQRSVNCTVCGREFVSSRACGAHMAQVHGPGKFKCKLCREVMHTLDERKLHYLLRHPGRHPFECAECGKSFQYKSSLYMHKQEHSPNKQSYTCSYCSKVFAKRDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYGCPHCPRTFADKGAATSHARTHSKEASYACVYCGQTFVQKSKLTYHIRKHTGENLETCTICSKLFTSACSLREHMKIHLAKKKEAVQCPLCDKKYQDERYMLRHLRTAHTRTQMPCPLCDKTLTSMTGLRHHVVSHSGLNTFRCKCCPKSYAVKRSVLKHLRKRHGMKGTEINIKDYFKRIDPRDCNLGLDEEAMTRIFGPPKKTMNDVLIGDFVTFNKNLNLANLQKDGDDDDNDDDGNDDDENDDGNDDEHSDNDENENESNEKVEQIKEVIIKTEKRDGDELEPTDFVCVKIEPMEEEGEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411840;
90% Identity: iTF_00156539;
80% Identity: -