Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387355.1:18046659-18058825[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.63 46 5.5 0.1 2 23 117 138 116 138 0.95

2 17 0.014 1 10.7 0.2 2 23 142 164 141 164 0.93

3 17 0.23 17 6.9 1.3 3 23 400 421 399 421 0.97

4 17 0.12 8.5 7.8 0.1 1 20 429 448 429 450 0.94

5 17 0.021 1.5 10.2 0.9 3 23 461 481 460 481 0.96

6 17 4.7 3.4e+02 2.8 0.4 1 23 497 520 497 520 0.86

7 17 0.0044 0.32 12.3 2.4 1 23 529 552 529 552 0.90

8 17 0.81 59 5.2 0.3 3 23 629 650 627 650 0.83

9 17 9.6e-05 0.007 17.5 1.1 1 23 684 706 684 706 0.97

10 17 2e-05 0.0015 19.7 1.5 1 23 713 735 713 735 0.98

11 17 0.00012 0.0084 17.3 2.3 1 23 740 762 740 762 0.96

12 17 0.00023 0.017 16.3 0.3 3 23 770 790 768 790 0.98

13 17 4.1e-05 0.003 18.7 1.1 1 23 796 818 796 818 0.94

14 17 0.00042 0.031 15.5 2.6 2 23 825 846 825 846 0.98

15 17 0.00039 0.028 15.6 0.4 2 23 855 877 854 877 0.97

16 17 0.00075 0.055 14.7 0.2 2 23 883 904 882 904 0.95

17 17 0.0028 0.2 12.9 1.1 1 23 910 933 910 933 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.63	46	5.5	0.1	2	23	117	138	116	138	0.95
2	17	0.014	1	10.7	0.2	2	23	142	164	141	164	0.93
3	17	0.23	17	6.9	1.3	3	23	400	421	399	421	0.97
4	17	0.12	8.5	7.8	0.1	1	20	429	448	429	450	0.94
5	17	0.021	1.5	10.2	0.9	3	23	461	481	460	481	0.96
6	17	4.7	3.4e+02	2.8	0.4	1	23	497	520	497	520	0.86
7	17	0.0044	0.32	12.3	2.4	1	23	529	552	529	552	0.90
8	17	0.81	59	5.2	0.3	3	23	629	650	627	650	0.83
9	17	9.6e-05	0.007	17.5	1.1	1	23	684	706	684	706	0.97
10	17	2e-05	0.0015	19.7	1.5	1	23	713	735	713	735	0.98
11	17	0.00012	0.0084	17.3	2.3	1	23	740	762	740	762	0.96
12	17	0.00023	0.017	16.3	0.3	3	23	770	790	768	790	0.98
13	17	4.1e-05	0.003	18.7	1.1	1	23	796	818	796	818	0.94
14	17	0.00042	0.031	15.5	2.6	2	23	825	846	825	846	0.98
15	17	0.00039	0.028	15.6	0.4	2	23	855	877	854	877	0.97
16	17	0.00075	0.055	14.7	0.2	2	23	883	904	882	904	0.95
17	17	0.0028	0.2	12.9	1.1	1	23	910	933	910	933	0.98

Sequence Information

Coding Sequence: ATGTCTTCTGAAGAATCTGACGATGAACCCCTTGCGGCTATAGCAGCTGCAAAGAAGTTGAATCCGGGGAAATATGCAGCTGAACTTGAAATTCTTTCTAAAGATGAAGCGGCCGAGAGAAAAAAGAAGAAAATAGTTCCCGAGAAGAAAATGTCGGCTATTACGATTAAAATTAACCGCGCTTTGAAAGCTGTGATCAACCCGCCGGTCGTCGAGCGGCCCATGGACGTATGGCTGTATCTAAAAGACCTGAATCCAACAGGGCCTTACAGTTGTTTACTTTGTTCTAATTGGTTCATTAACAGGGGTAAAATGATCGTACACTACATGTTGAATCACAAGAAAGACTATTGCGGGATTTGCAGATATTTTGTGCCTGATAGAGAATCCTGGTTTGCGCACCTTAAATTCCACATTCCATGGCCTTGCTCTCAATGCGTCAAGAACTTTGAAACAGAGGGTGAGCTCAGACAGCACTTTAGCTCGGAACACAACTTGGTGCACTGCCGACTGTGCCACTTCCGAGTAGCTGACGATGACCAGTACAACACTCACTTGATACAAAAACACAGTGTCTCTAACTTGGCTAGCAAAGAAAAGGAGCTGTGGGAGTTTGAGTATGAAGGCAGCAATAAATTCCTCTGCTTGCTCTGCTCCAAGTCAAATAACCTATGTGACATGTTCTTTAACCATTACATGGGCTATCACCATTTCACATTGAAATGTCTTAGCTCTTTACTGTCTGGAAGAGACCTACCATTTTTGGTCAACGGTGCTGACATCAGTCCTGCGTTTATTGAAGGTGAATTAAAAGATCACAACAGAATTGGTTATGTCGACTTGGATGGTAAAGCTGCTGAAACAATAAATGAAGAAGAACACAGTGACAGTGAAACACAAGATCTTCTAAATGTCCTTATACCGGAAATTAAGCAGGAAGCTATGAGTGAAGAAGATACACCGACTGACAATAAAACAAAAGATAAACAGAAGAAAGTTAGAGATGAAAATGACATTGCTAATATTTACAAGGGTGATGAAGATTTTGATGTCACATTAACAGAGTTGATCATACTAGAGAAATGCTACTTTGAATATGTGAACCGGACATTAAATGACATTAATTCTAATTTGGTTCCCATATCTGATATAGACTATTCTGCTTTGAAATCTGATCTGCCAACAACAGATATATTATGCTCACTCTGCAAGAACAAGTTTAATAATATTCAGTCATTTATTTCGCACATGATAAAAAATCATTTAATGAAGACGGCACCACTATTTTCTTGTCGAGTTTGTGCGACTACATTTGAAAATCAGACAGAGTTGGACAGTCATGTTAGCGAGGAGTTAGGGGACTTTGATGATCTGTGGCTATGTCAGTTTTGTGACAAAGAATTTGATAACAGAGAAGCAACAAGGCGGCATTTGACAGAGCACTGGAATGTCATGGAGTTTGACAACTGTTACAGTCCGCATTTGGGTTTCAAGTGTAAATTTTGTCCAACACTCTTTTGGAACGAAACAGACAGAGAAGCACATCAGGTTCGTGTACATTTCAACCAACACAAGGACCAATTTTACAAATGCGAAGATTGCTCTGAAACATTCAGTGATAAGATATTCTTCATACACCACTACGTAGAAAAACATCAGTCAACTCTCTCTCCCTCTTACCTGCTCAAATGCAGCATCTGTTGTGTGGTGCAGTCCAATGTGGAGGAGATGAGAGCCCATTTTAAAGCCAAACATCCGGAGGCAAGGAAAATATTCTGCTCAATGGACTCTTGTCAGTACCGTCCGCTGAGCCATAGGAAGTCTTTCAGGTTCCATTTAAGGTCGGTGCACGATCCCGCAGTGCGCCCCCAGCGCTCCGTGAACTGTGCCATCTGTGGCCGCGAGTTCGTTAGCGCCCGCGCCTGCGGGGCGCACATGGCACACGTTCATGGCCCCGGCAAGTTTAAGTGCAAGCTGTGCAGAGAAGTCATGCATACTATGGATGAGAGGAAACTGCACTATCTCCTGCAACATCCAGGCCGTCACCCGTTCGAGTGCGCGGAGTGTGGCAAGTCCTTCCAGTACAAGTCGTCGCTCTACATGCACAAGCAAGAACACTCGCCCAACAAACAGAGTTACACGTGCTCCTACTGCTCCAAAGTTTTTGCGAAACGCGACTCGTTCCGCGAGCACCTTCAAATCCACGAAGGGCCGCGTCACGCGTGCTCCTACTGCCCGATGCGTTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGAGGCGGCACACGGGGGAGCGGCCCTATGGCTGCCCGCACTGCCCGCGCACTTTCGCTGACAAGGGCGCTGCTACATCGCATGCCAGAACACATTCCAAGGAGGCATCCTACGCTTGTATTTATTGCGGACAGACGTTCGTGCAGAAATCCAAGCTGACATATCATATCAGGAAACATACGGGAGAGAATCTAGAGACTTGTACGATTTGTTCTAAACTGTTCACCAGCGCTTGTTCGTTGCGGGAACATATGAAAATACACCTGGCGAAGAAGAAAGAAGCTGTGCAGTGTCCTTTGTGTGACAAGAAGTACCAAGACGAGCGTTACATGCTTCGTCACCTCCGGACGGCACACACTCGCACACAGATGCCGTGTCCGCTGTGTGAAAAGACGTTCACAAGTATTGCTGGCTTGCGCCACCACGTGGTCTCTCATAGCGGTCTCAACACATTCCGGTGTAAAGCCTGCCCGAAGTCTTACGCTGTGAAGCGGTCCGTCGTGAAGCATCTAAGGAAACGCCACGGTATGAAAGGGACAGAAATAAACATCAAGGACTACTTTAAACGAATAGACCCGCGAGACTGCAACCTCGGGCTCGACGAAGAAGCCATGACACGAATATTCGGACCACCAAAGAAAACCATGAACGACATTCTAATTGGTGACTTTGTTACGCTTACTAAAAAGTTGAAATTACCCAGTGTAAAGAAAGATGGTGACGATGACGACAATGACGACGATGAGAACGACGACGATGAAAATGACGATGCTAATGACAATGACGAACATTCCGATGATGATAATGATAATAAGAGTGAGAATAATGAAAAAGTTGAAGAAATTAGAGAAGTTATTATAAAAACGGAGAAGAGGGATGGCGATGACTTGGAACCCACTGATTTTGTTAGTGTTAAGATTGAACCGATGGATGAGGATGATGAAGTTTTAGGATCTTAA
Protein Sequence: MSSEESDDEPLAAIAAAKKLNPGKYAAELEILSKDEAAERKKKKIVPEKKMSAITIKINRALKAVINPPVVERPMDVWLYLKDLNPTGPYSCLLCSNWFINRGKMIVHYMLNHKKDYCGICRYFVPDRESWFAHLKFHIPWPCSQCVKNFETEGELRQHFSSEHNLVHCRLCHFRVADDDQYNTHLIQKHSVSNLASKEKELWEFEYEGSNKFLCLLCSKSNNLCDMFFNHYMGYHHFTLKCLSSLLSGRDLPFLVNGADISPAFIEGELKDHNRIGYVDLDGKAAETINEEEHSDSETQDLLNVLIPEIKQEAMSEEDTPTDNKTKDKQKKVRDENDIANIYKGDEDFDVTLTELIILEKCYFEYVNRTLNDINSNLVPISDIDYSALKSDLPTTDILCSLCKNKFNNIQSFISHMIKNHLMKTAPLFSCRVCATTFENQTELDSHVSEELGDFDDLWLCQFCDKEFDNREATRRHLTEHWNVMEFDNCYSPHLGFKCKFCPTLFWNETDREAHQVRVHFNQHKDQFYKCEDCSETFSDKIFFIHHYVEKHQSTLSPSYLLKCSICCVVQSNVEEMRAHFKAKHPEARKIFCSMDSCQYRPLSHRKSFRFHLRSVHDPAVRPQRSVNCAICGREFVSARACGAHMAHVHGPGKFKCKLCREVMHTMDERKLHYLLQHPGRHPFECAECGKSFQYKSSLYMHKQEHSPNKQSYTCSYCSKVFAKRDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYGCPHCPRTFADKGAATSHARTHSKEASYACIYCGQTFVQKSKLTYHIRKHTGENLETCTICSKLFTSACSLREHMKIHLAKKKEAVQCPLCDKKYQDERYMLRHLRTAHTRTQMPCPLCEKTFTSIAGLRHHVVSHSGLNTFRCKACPKSYAVKRSVVKHLRKRHGMKGTEINIKDYFKRIDPRDCNLGLDEEAMTRIFGPPKKTMNDILIGDFVTLTKKLKLPSVKKDGDDDDNDDDENDDDENDDANDNDEHSDDDNDNKSENNEKVEEIREVIIKTEKRDGDDLEPTDFVSVKIEPMDEDDEVLGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411840;
90% Identity: iTF_00155574; iTF_00325729;
80% Identity: -