Cros027196.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000041.1:4642111-4645367[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.9e-07 1.5e-05 26.1 2.7 1 23 165 187 165 187 0.97 2 11 0.099 7.9 8.1 8.3 1 23 193 216 193 216 0.97 3 11 0.054 4.4 8.9 0.3 1 23 224 246 224 246 0.95 4 11 0.041 3.3 9.3 5.8 1 23 253 275 253 275 0.97 5 11 0.0043 0.34 12.4 4.3 1 23 281 303 281 303 0.98 6 11 0.00063 0.051 15.0 1.8 2 23 310 332 309 332 0.95 7 11 0.0083 0.66 11.5 2.2 2 23 338 357 337 357 0.97 8 11 5.1e-06 0.00041 21.6 2.8 1 23 363 385 363 385 0.98 9 11 9.7e-06 0.00078 20.7 1.3 1 23 391 413 391 413 0.98 10 11 8.4e-05 0.0067 17.8 4.1 1 23 419 442 419 442 0.98 11 11 0.02 1.6 10.3 0.3 1 19 448 466 448 469 0.95
Sequence Information
- Coding Sequence
- ATGAAAAGGGGGATCATTCAGAAAGATGCCTTCATCGAACCAGAAACTTTCATGTCTAAAAACGGCAAacttaaaaagagaaaaaatcatcatttgCAATTCTTGGACCACATTTTAATGGATGAGCTAAAAATTGATATGAACAGCAAGAACAATAAacacaacataaataaaacaaatgggGATAATAACAATGATTTGGATATAAGCAACCAAAATAATACTGTAAGTAGTTCAAAAGATGGACCAAGAGAAACTGAAAAAACCAAAGATAAATCTAGCAACAGTAATTTATCAGAATTACCAGAAGAGCTTTCTGAGACTATAACTAGCACATCTACAAATCCTATGGAAGAAACCCATGAGCAACCCAAAACAGACAAaaccaaaaagaaaaacaaaaaagtggACAGAGAAACAAAAGAATTACCCTCTAAAAGACACCAGAAGCTTCAGACAGCGACAGTGAGCACTGCAACTGCTCTTAGTCGTTTTGACTGTGACTACTGCAGGAAATCATTTAACACTAAGTCATCCCTACGGAGACACATAAACATGCACCTTAATGTGAAACCATTTGAGTGCCGCTACTGCCACATGAAGTTCGGCCAGTGTTGCAACTGGCGCTCGCACATGAAAAACGTTCATCCAAAACTCAAGAGGGAGAAATACATTTGCCGCAAATGTAGAAAACCATTCTTACTCAAAGAAAACTTGACCCTGCATTTAGCTGCGCATATTAAGAAAGAGAACTCTCATAAATGTGTGTTTTGCAATAAAATGTTCTCCACCCACTTATTGCTGTCTCAGCATGAGAAGCAACACATGAACTTAGGCCGTTACAAGTGCTCAATCTGCACCAAGAGCTACGATTCCCATAGTCGCTTCTCCCTTCACGTAAAAAGCCATTTGGAGGTCAAAGATTTGAGCTGCCAGTACTGCGGTAAGCAGTTTCTGAGGCCCAGTTCTATAAAGAGACACATTCAGATATGCCACGGTGGGATAAGAGTGCAGTGTCCAGTTTGCAAGAAGAAGTTGAAGGGTCATCTAACTGAGCATATGCGGACTCATGAGAATGAACGGCCGCATGAGTGCCAGGAGTGCGGGCAGAGATTTACTCAGTCTACGCAGTTGAATGTCCACAAGAGGTCGCACACAGGAGCTAGGCCTTATCCCTGTAGGATTTGTAAGCGGCCATTTTCACACTCCAACGCTCTTATGCTCCACATAAGACGGCATACAGGCGAGAAACCCTTTCAATGCGCTATGTGCCATATGTCCTTCTCCCAGCTACCACATATGAAAAGTCACATGCGTAAAATCCATGGCAAAGAAAAGTACTACAAATGTGGACAGTGTACCACATTTTTCAGGCTTAAAGCGGAACTGGAAATGCATGAAACCAACTGTGTAACTAAAGATAAGGACTTGACTTTCGATGAACAAGTGCAGGCTTCCATGGAGTCTGGGGAAACGCAGATGAACATTTCGAAAATGCGGTTCCTGCTAGCCCTGCTTTTTACCAAGATCGCGACCAAAGAAAAACTTAAATACTTAGGTTTCAACAAACGTCTCATAGATGATATTCTGGTGGAGTCAGTCGAAGCAATGGGGCACACGCCATGCACGGACAAGTTCCAGTCTCCTTTCATGCGTCTTAAGACCAACATCTCGATATTAATGCAAGGGACCGTGCCTAAGCATGATTTGATCAAGTTCAGAGAGTCCAAGAAAACCATCGAAGAATTACTGGAGTTGCTGACAGATGATAAGAAATAG
- Protein Sequence
- MKRGIIQKDAFIEPETFMSKNGKLKKRKNHHLQFLDHILMDELKIDMNSKNNKHNINKTNGDNNNDLDISNQNNTVSSSKDGPRETEKTKDKSSNSNLSELPEELSETITSTSTNPMEETHEQPKTDKTKKKNKKVDRETKELPSKRHQKLQTATVSTATALSRFDCDYCRKSFNTKSSLRRHINMHLNVKPFECRYCHMKFGQCCNWRSHMKNVHPKLKREKYICRKCRKPFLLKENLTLHLAAHIKKENSHKCVFCNKMFSTHLLLSQHEKQHMNLGRYKCSICTKSYDSHSRFSLHVKSHLEVKDLSCQYCGKQFLRPSSIKRHIQICHGGIRVQCPVCKKKLKGHLTEHMRTHENERPHECQECGQRFTQSTQLNVHKRSHTGARPYPCRICKRPFSHSNALMLHIRRHTGEKPFQCAMCHMSFSQLPHMKSHMRKIHGKEKYYKCGQCTTFFRLKAELEMHETNCVTKDKDLTFDEQVQASMESGETQMNISKMRFLLALLFTKIATKEKLKYLGFNKRLIDDILVESVEAMGHTPCTDKFQSPFMRLKTNISILMQGTVPKHDLIKFRESKKTIEELLELLTDDKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156514;
- 90% Identity
- -
- 80% Identity
- -