Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387353.1:7125301-7128515[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.4e-07 1e-05 26.5 1.0 1 23 230 252 230 252 0.97

2 11 0.028 2 9.8 7.2 1 23 258 281 258 281 0.97

3 11 0.06 4.4 8.7 0.3 1 23 289 311 289 311 0.95

4 11 0.005 0.36 12.1 4.7 1 23 318 340 318 340 0.97

5 11 0.0013 0.093 14.0 2.3 1 23 346 368 346 368 0.99

6 11 0.0007 0.051 14.8 1.8 2 23 375 397 374 397 0.95

7 11 0.0091 0.66 11.3 2.2 2 23 403 422 402 422 0.97

8 11 3.5e-07 2.6e-05 25.2 2.2 1 23 428 450 428 450 0.98

9 11 1.2e-05 0.00086 20.4 1.4 1 23 456 478 456 478 0.98

10 11 9.2e-05 0.0067 17.6 4.1 1 23 484 507 484 507 0.98

11 11 0.00068 0.05 14.9 0.3 1 19 513 531 513 534 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.4e-07	1e-05	26.5	1.0	1	23	230	252	230	252	0.97
2	11	0.028	2	9.8	7.2	1	23	258	281	258	281	0.97
3	11	0.06	4.4	8.7	0.3	1	23	289	311	289	311	0.95
4	11	0.005	0.36	12.1	4.7	1	23	318	340	318	340	0.97
5	11	0.0013	0.093	14.0	2.3	1	23	346	368	346	368	0.99
6	11	0.0007	0.051	14.8	1.8	2	23	375	397	374	397	0.95
7	11	0.0091	0.66	11.3	2.2	2	23	403	422	402	422	0.97
8	11	3.5e-07	2.6e-05	25.2	2.2	1	23	428	450	428	450	0.98
9	11	1.2e-05	0.00086	20.4	1.4	1	23	456	478	456	478	0.98
10	11	9.2e-05	0.0067	17.6	4.1	1	23	484	507	484	507	0.98
11	11	0.00068	0.05	14.9	0.3	1	19	513	531	513	534	0.95

Sequence Information

Coding Sequence: ATGGCTAAAACTAGAGAAAAATCTAAGAAAAAAGATAAAGATGATAAGTTATCAACAGGTAAGAAAAAGAAACAAATGACTCTGCAAGAACTTAAGTTTCTATCGCCGGACGAAAAAATGCAATACCTACTAGAAAACGGTCATATGGTAAAAGATACGTTGTTTAACAAAGTGGCTATGAAGAGGGGGATCGTTCAGAAAGACGCCTTGGTCATTGGACCAGAAACATTCATGTCTAAAAGCGGCAAACTTAAAAAAAGGAAAACACATCATTTGCAATTCTTGGACCACATTTTAATGGATGAGCTTAAAATTGATATGAACAACAGGCATAATAAACACAAAAACAAAACAAATGGGGATAATAACAATGATATGGATATTAGCAACCAAAATAACACTGTAAATAGTTCAAAAGATAAAACAAAAGAAACTGAAAAAAGTAAAGGTAAATCTAGTGACAGTAATATAACTGAACTGACTGGAGAGCTTTCCGAGAGCATAATTACTAACACATCTAAAAATCCTATTAGTTTGAAAGAAATCCACGAGGTACCGAAAACAAAGAAAGACAAAACCAAAAAGAAAATCAAGAAACTGGATAAAGAAACACAAGAATTGCTCACTAAACGACTCGAAAAGCTTAAGACGGTGCAACTCAGTACTGGAACCGTTTACCTCGGTCGTTTTGACTGTGACTACTGTGGGAAATCATTCAATGCTAAATCATCTCTACGGAGACACATAAATATGCACCTTGATGTGAAACCATTTAAGTGCCGCTACTGCAACATGAAGTTTGGGCAGTGTTGCAACTGGCGCTCTCACATGAAGAATGTCCATCCAAAGCTCACGATGGAGAAATACATTTGCCGCAAATGCCGCAAACCTTTTTTGCTCAAAGAAAATCTGACCTTGCATTTAGCTGCACACATAAAAAAGGAGAACTCGCACAAATGCGTGTTCTGCGATAAAGTTTTCTCCAGCCACATGCTGCTGTCTCAGCACGAGAAGCAGCACATGACCCCAGGCAAATACAAATGCTCAATCTGCACCATGAGCTATGAATCCCGCAGTCGCTTCTCCCTTCACATAAAAAGACATTTGGAGGTCAAAGATTTGAGTTGCCAGTACTGCGGCAAACAGTTTCTGAGGCCCAGTTCTATAAAGAGGCACATTCAGATATGCCACGGTGGTATAAGAGTGCAGTGTCCGGTTTGTAAGAAGAAGTTGAAAGGGCATTTGACCGAGCATATGAGGACTCATGAGAATGAACGACCGCATGAATGCCAGGAGTGTGGGCAGAGGTTTACTCAGTCTACGCAATTGAATGTCCACATGAGGTCTCATACTGGGGCTAGGCCTTACCCCTGCAGGATTTGTAAGCGCCCGTTCACACACTCCAACGCCCTTATGCTCCACATAAGGCGCCATACGGGCGAGAAGCCATTCCAATGCGCTATGTGCCATATGTCCTTCTCCCAGCTACCGCATATGAAAAGTCACATGCGTAAAATTCATGGCAAAGAAAAGTATTACAAATGCGAACAGTGTAACAAATTCTTCAGACTCAAGGCGGAGTTGGAAATGCATGAAATCAACTGTGTAACTAAAGACAAGGACTTGACTTTCGATGAACAAGTGCAAGCTTCCATGGAGTCCGGGGAAACACAAATGAACATTTCGAAAATGCGGTTCCTGCTAGCTCTGCTTTTTACCAAGATTGCGTCCAAAGAAAAATTGAAATATTTAGGTTTCAACAAACGTCTCATAGACGATATTCTGGTGGAGTCAGTCGAAGCAATGGGGCACACGCCATGCACGGACAAATTCCAATCTCCCTTCATGCGTCTTAAGACCAACATCTCCATATTAATGCAAGGGACCGTGCCTAAAGATGACTTGATCAAGTTCAGAGAATCAAAGAAAACCACCGAAGAATTACTGGAGTTGCTGACCGATGATAAGAAATAG
Protein Sequence: MAKTREKSKKKDKDDKLSTGKKKKQMTLQELKFLSPDEKMQYLLENGHMVKDTLFNKVAMKRGIVQKDALVIGPETFMSKSGKLKKRKTHHLQFLDHILMDELKIDMNNRHNKHKNKTNGDNNNDMDISNQNNTVNSSKDKTKETEKSKGKSSDSNITELTGELSESIITNTSKNPISLKEIHEVPKTKKDKTKKKIKKLDKETQELLTKRLEKLKTVQLSTGTVYLGRFDCDYCGKSFNAKSSLRRHINMHLDVKPFKCRYCNMKFGQCCNWRSHMKNVHPKLTMEKYICRKCRKPFLLKENLTLHLAAHIKKENSHKCVFCDKVFSSHMLLSQHEKQHMTPGKYKCSICTMSYESRSRFSLHIKRHLEVKDLSCQYCGKQFLRPSSIKRHIQICHGGIRVQCPVCKKKLKGHLTEHMRTHENERPHECQECGQRFTQSTQLNVHMRSHTGARPYPCRICKRPFTHSNALMLHIRRHTGEKPFQCAMCHMSFSQLPHMKSHMRKIHGKEKYYKCEQCNKFFRLKAELEMHEINCVTKDKDLTFDEQVQASMESGETQMNISKMRFLLALLFTKIASKEKLKYLGFNKRLIDDILVESVEAMGHTPCTDKFQSPFMRLKTNISILMQGTVPKDDLIKFRESKKTTEELLELLTDDKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00342509; iTF_00325721; iTF_00462676; iTF_01135067; iTF_01136054;
90% Identity: -
80% Identity: -