Cros029516.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000046.1:7054297-7076534[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.028 2.2 9.8 3.8 2 23 74 95 73 95 0.95 2 15 0.00011 0.0089 17.4 0.4 2 23 138 161 137 161 0.97 3 15 0.028 2.3 9.8 0.2 1 23 167 189 167 189 0.93 4 15 0.0017 0.13 13.7 3.3 1 23 195 217 195 217 0.98 5 15 0.038 3.1 9.4 0.2 1 23 325 347 325 347 0.98 6 15 1.6 1.3e+02 4.3 7.2 1 23 354 376 354 376 0.95 7 15 0.0011 0.086 14.3 1.8 1 23 416 439 416 439 0.95 8 15 0.00045 0.036 15.5 1.8 1 23 446 469 446 469 0.98 9 15 0.01 0.84 11.2 0.2 2 23 491 513 490 513 0.96 10 15 0.0011 0.09 14.2 1.7 1 23 524 546 524 546 0.98 11 15 0.092 7.4 8.2 2.6 3 23 552 573 551 573 0.95 12 15 6.9e-06 0.00055 21.2 0.6 1 23 579 601 579 601 0.97 13 15 0.0094 0.76 11.3 0.6 1 23 607 629 607 629 0.96 14 15 9.4e-05 0.0075 17.6 0.1 1 23 635 657 635 657 0.97 15 15 8.2e-05 0.0065 17.8 1.0 2 23 664 686 663 686 0.95
Sequence Information
- Coding Sequence
- ATGATAGACGCGTCTACCCACAAATGCCGGAAGCGCGGGCGGAAACGGAAATGCTTGAACAAGGACGAAACTGTCATTTGCGTGCCCACACAGGAGGACTTCTTGAAGagAGCCCAAGGCAGGCCCAGACAAAGCCCGGATGATTCCAATAGTGGCTTACTTGTTGAGAGGTCTCGCAAGAAGAAACCTTCGGAACTGACTTCAGATCCGCAGATAGTGACTTGCCATAATTGCAACGAGTCCTTCACTTCGAAAGTGCGACTGAAATTCCACATGCAATTCCACGAGACGACATCGATGCGTACGCCGTCAGGAAAGTTCGCGTGCACTGAGTGCGCTGGTGAGGAGTTCGCCACGGAGACTGAGCTGTTTGACCATCTGCACTTCCGGCACCATAAGCAGCGGCGCTGGCAGTGCCCGGTCCAGGGCTGCGGAAAGACCTTCTTCCTCAGGGCGACGTTGACGAAACACAGTCGCACGCACACAGACACGCGCCGCTACGTGTGCGGGACCTGTGGCAAGAGGTTTTTGGACAAGCAGACGCTGGACGAGCATGGGGTCACACATTTACAGATCAAGCCGTTCCAATGCCACATCTGCCTGAAGCAGCTGACGCGTCGCTCGCGCCTGCGCATGCATCTGCGCGCGCACGAGGAGGCGCTCTGCCCTGCGCTAGTACCCGTCTGCGCCGCCTGCCGCCGCGCCTTCGCCGACGTGCCGCACGCGCAGGAGCACGTGACTAAATCTGCTGCGTGCATAGAGATCTTCGCGCGGGAAATGAGGGAGGAGGCTGAGGAGCCGACCGCCGTGCTCTCGCCCACTAGTGGGCTCGTGCGACCCACCACTAGGAAACCTGACAGGTCGTGCGCGCTGATAGCGTGCGAGGCGGTgtgcgcgggcgcggccgccCTGCTGGCGCCGCTGCCGCCCGCCCTGCGCCGCGCCGTGCGCATCGTGCAGGTCGAGAAGGCGTTCCGTTGCGAGTACTGCGAAGACGTGTTCTACCTAGAAGAAGCGTTGAATAACCACCGGAGCATACACAAGGGTGTCAAGAATCCTTTCACCTGCCATATCTGCAAAGTCAGCTTCGCTACTTACTCCAGATGCACTACCCACAAGACCACGCATGGGTTCTACAAGCGCTCGCTCGCCGATGCCAAGAAACAAGATAAGCCTCTCAAAGAGGAGGCGGGGCCCTCTGCCAACGGGATCCTGGGCTACGGAGGGTTCCCGGTCGTCAAACATTTCTTGTGCGAGGACTGCGGCCGCTCGTACCTGCATTGGACATATCTTCAAGTGCACAGGCGTATGAAGCACGCCAACGAGAATTACATATACAAGTGCAACCACTGCGATCTGACCTTCCCCAACAGTTGGAGCGTGGCGTATCACAGAAAAAAGGTACACGGCAAGACCGGACTGGACGAAGGGAACGGCGCTACCAAAATGGCTAAAGACGATTACAGAATCCCTTGTCGTGATTGCGAAGAAGTGTTGCCGAACAAAACTGCCCTCTATAAACACAGGAAGAAAGAACATAGTGACTTGTCCTTACGAATTAataGCGTGCATGTGTGCCACGTGTGCAGCAAGCGCTACCTGTCTCGCGCGGGGCTGGAGGCGCACATCCGGACGCACACCGCGCGCGCCGCTTGCGCACACTGCGGGGACAGCTTCGCGCACGCGCAGAAACTGCATCAGCACCTCAAAGAGGTCCACGGGCACGAGCTGGATTTCCACTGCGACGTGTGCGACAAGCGGTTCGCGTCGCGCGCGTCGCTGTCCGCGCACATGGCGTCgcacgcggcggcgcgcgcgcacgcgtgCGCGGTGTGCGGCCACGCGTGCCGCACGCCCGCCGTGCTGGCCGAGCACGCGCGCACGCACACCGGCGAGCGGCCGTTCCCTTGTGACGTGTGCGGGGTCGCTTTTAGAAGGTCGACGGCTATGCGGAACCACCGGCTGATCCACACGGGGGTGCGCGCGTGGCCGTGCGCGCGCTGCCCCAAAAGGTTCCGCGTGCGCTCGGACCTCAACACGCATCGGCGTAGGAAGCACCCCGCGGGACTGGCTGTCATAGAGCTGGAAGGCCTAAATCCAGGGCATGAGCAGATCATGGAGTGTCTCACAGCCAACAACATACCGCACGAGAACGTCGTCGAAATCACCAAGATGTCATTTGCTAAGGGAACTTCCAGCGTGATCCCGGACAGTGCGCGGGCGCTTGCTTTGGTgtcggcgccgcgcgcgcccgtCGCTTGGGGACGCCCGCCTCCGCTCAACAACGAAAAAAGTTTTGACTTTGCTCCGCTGCCAGCAGCGGCGTGGGGCTCCCCGgagccggcgcggcgcgggcgcggcatCGCGCGGCAGCCGCGCCGCCCCGCCATCCTGCAGCGCGGCGCGTACCCCGCCAACACACAGCACGAGGAACTGACAGAGATAAATGTGCAAATGCTGCTGCGTGACAGCACGCTCGACCGCCAGGGGGCGTTGCCGCTTGAAGACTCTCTGCTGCTCGAATAG
- Protein Sequence
- MIDASTHKCRKRGRKRKCLNKDETVICVPTQEDFLKRAQGRPRQSPDDSNSGLLVERSRKKKPSELTSDPQIVTCHNCNESFTSKVRLKFHMQFHETTSMRTPSGKFACTECAGEEFATETELFDHLHFRHHKQRRWQCPVQGCGKTFFLRATLTKHSRTHTDTRRYVCGTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEALCPALVPVCAACRRAFADVPHAQEHVTKSAACIEIFAREMREEAEEPTAVLSPTSGLVRPTTRKPDRSCALIACEAVCAGAAALLAPLPPALRRAVRIVQVEKAFRCEYCEDVFYLEEALNNHRSIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQDKPLKEEAGPSANGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENYIYKCNHCDLTFPNSWSVAYHRKKVHGKTGLDEGNGATKMAKDDYRIPCRDCEEVLPNKTALYKHRKKEHSDLSLRINSVHVCHVCSKRYLSRAGLEAHIRTHTARAACAHCGDSFAHAQKLHQHLKEVHGHELDFHCDVCDKRFASRASLSAHMASHAAARAHACAVCGHACRTPAVLAEHARTHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWPCARCPKRFRVRSDLNTHRRRKHPAGLAVIELEGLNPGHEQIMECLTANNIPHENVVEITKMSFAKGTSSVIPDSARALALVSAPRAPVAWGRPPPLNNEKSFDFAPLPAAAWGSPEPARRGRGIARQPRRPAILQRGAYPANTQHEELTEINVQMLLRDSTLDRQGALPLEDSLLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00021625;
- 90% Identity
- iTF_00155560;
- 80% Identity
- -