Acra017622.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Archips crataeganus
Gene Symbol
-
Assembly
GCA_947859365.1
Location
OX402075.1:7040811-7060778[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.025 1.7 9.9 3.8 2 23 54 75 53 75 0.95
2 16 4.7 3.2e+02 2.7 1.8 1 23 87 111 87 112 0.88
3 16 0.0001 0.0068 17.4 0.4 2 23 118 141 117 141 0.97
4 16 0.026 1.7 9.8 0.2 1 23 147 169 147 169 0.93
5 16 0.0015 0.1 13.7 3.3 1 23 175 197 175 197 0.98
6 16 0.091 6.1 8.1 0.1 1 23 305 327 305 327 0.96
7 16 1.4 97 4.3 7.2 1 23 334 356 334 356 0.95
8 16 0.00096 0.065 14.3 1.8 1 23 396 419 396 419 0.95
9 16 0.00041 0.028 15.5 1.8 1 23 426 449 426 449 0.98
10 16 0.0094 0.64 11.2 0.2 2 23 471 493 470 493 0.96
11 16 0.0059 0.4 11.8 1.5 1 23 504 526 504 526 0.98
12 16 0.025 1.7 9.9 1.9 3 23 532 553 531 553 0.95
13 16 0.00013 0.0088 17.1 0.2 1 23 559 581 559 581 0.98
14 16 0.0085 0.58 11.3 0.6 1 23 593 615 593 615 0.96
15 16 8.5e-05 0.0057 17.6 0.1 1 23 621 643 621 643 0.97
16 16 0.00011 0.0072 17.3 1.1 3 23 651 672 649 672 0.95

Sequence Information

Coding Sequence
ATGATAGATGCGTCTACCCACAAATGCCGGAAGCGTGGGCGCAAACGGAAGTGCTTGAACAAGGACGAAACTGTCATTTGCGTGCCTACACAAGAAGACTTCTTAAAGAGGACACGCAAGAAGAAACCTTCGGAACTGACTTCGGATCCGCAGATAGTGACTTGCCATAACTGCAATGAGTCTTTCACATCCAAAGTTCGATTGAAGTTCCATATGCAATTCCACGAGAACACATCGATGCGTACAGCATCAGGCCAGTTCACGTGCACCGAGTGTGCTGGCGAGGAATTCGCCACAGAGACGGAGTTGTTCGATCACCTCCACTTTAGACACCACAAGCAGCGCCGCTGGCAGTGCCCGGTCCAGGGTTGCGGGAAGACCTTCTTCCTCAGGGCGACACTGACGAAGCACAGCCGCACGCACACAGACACGCGCCGCTACGTGTGTGGAACATGCGGCAAGAGGTTTCTGGACAAGCAGACATTGGACGAACATGGGGTCACGCATTTACAGATCAAGCCGTTTCAATGCCACATCTGCCTGAAGCAACTGACGCGTCGCTCTCGCCTGCGCATGCACTTACGCGCGCACGAGGAGGCGCTCTGTCCCGCTCTAGTGCCTGTCTGCGCCGCCTGCTATCGCGCCTTCGCTGACGTCGCACAGGCGCAGGAGCACGTAACGAAATCTACGGAATGCATCGAGTTCTTCGCTCGGGAAATGAGGGAGGAGGCCGAAGAGCCAACAGCCGTGCTCTCGCCCACTAGTGGGCTTGTGCGGCCCACCACTAGGAAACCTGACAGCGCATGCGCACTGATAGCGTGCGAGGCGGTGTGCGCGGGCGCGGCGGCCATGTTGGCCGCGCTGTCTCCCGCGCTGCGTCGCGCCGTGCGCATAGTGCAAGTCGAGAAGGCCTTCCGCTGCGAGTACTGCGAGGACGTGTTCTACTTAGAAGAAGCATTGAACAACCACCGTGGTATCCACAAAGGTGTCAAGAATCCTTTCACCTGTCACATCTGCAAAGTCAGTTTCGCTACTTACTCCAGATGCACTACGCACAAGACTACCCACGGTTTCTACAAGCGCTCGCTCGCCGATGCCAAGAAGCAGGACAAGCCGCTGAAAGAGGAAGCGGGGCCCTCTGCCAACGGGATCCTGGGCTACGGAGGGTTCCCCGTCGTTAAACACTTTTTGTGCGAGGATTGTGGTCGCTCATACTTGCACTGGACGTATCTGCAAGTGCATAGGCGCATGAAACACGCCAACGAGAATTATATTTATAAATGTAATCACTGCGATCTGACCTTCCCGAACAGTTGGAGTGTGGCATATCACAGAAAGAAGGTGCATGGCAAGGCTGGGTTGGACGAAGGGAACGGCGCCACGAAAATGGCTAAAGACGATTACAGGATCCCTTGCCGCGACTGCGAGGAAGTGCTGCCAAACAAAACTGCGCTCTATAAACACAGGAAGAAGGAACATAGTGATTTGTCCTTACGAATCAACAGTGTGCACGTTTGCCACGTGTGCAGCAAGCGTTATTTGTCCCGCGCGGGGCTGGAGGCGCACGCGCGGACGCACACTGCGCGCGCCGCTTGCGCACACTGCGGGGATAGCTTCGCGCATGCGCAGGATCTGCACCAGCATCTCAAAGAGGTGCACGGGCACGAGCTGGACTTCAACTGCAACGTGTGCTCGATGCGGTTCGGGTCGCGTGGCGCGCTGTCGGCGCACATGCTGACGCACGCGGCGGCGCGCACGCACGCGGCGGCGCGCGCGCACGCGTGCGCGGTGTGCGGCCACGCGTGCCGCACGCCCGCCGTGCTGGCCGAGCACGCGCGCACGCACACCGGGGAACGGCCCTTCCCCTGCGACGTGTGCGGCGTCGCCTTCAGGAGGTCGACGGCGATGCGGAACCACCGTTTGATCCACACGGGGGTTCGCGCTTGGGCGTGCGCTCGCTGCCCCAAGCGGTTCCGCGTACGCTCGGATCTCAACACGCATCGGCGGCGGAAGCACCCCGCCGGCTTGGCTGTCATAGAGGTAGATGGTCTGAATCCGGGGCCTGAGCAGGTGATGGAGTGTCTCGCAGCCAACAACATACCGCATGAAAACGTTGTCGAAATCACCAAGATGTCTTTTGCTAAGGGTACGTCGAGCGTGATCCCTGACAGTGCGCGCGCGCTGTCTTTGGTGTCGGCGCCGCGTGCACCGGTCGCTTGGGGACGCCCGCCTGCTCTCAACAACGTGGCGGCCTGGGGCTCCCCAGAGCCGGCGCGGCGCGGGCGCGGCATCGCGCGGCACCCGCGCCGCCCCGCCATACTGCAGCGCGGCGCGTACCCAATTAACACACAGCACGAGGAGCTGACAGAGATAAACATACAAATGCTGCTGCGCGACAGCACGCTCGACAGCCAGGGGGCACTGCCGCTTGACGACTCGCTGCTGCTCGAATAG
Protein Sequence
MIDASTHKCRKRGRKRKCLNKDETVICVPTQEDFLKRTRKKKPSELTSDPQIVTCHNCNESFTSKVRLKFHMQFHENTSMRTASGQFTCTECAGEEFATETELFDHLHFRHHKQRRWQCPVQGCGKTFFLRATLTKHSRTHTDTRRYVCGTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEALCPALVPVCAACYRAFADVAQAQEHVTKSTECIEFFAREMREEAEEPTAVLSPTSGLVRPTTRKPDSACALIACEAVCAGAAAMLAALSPALRRAVRIVQVEKAFRCEYCEDVFYLEEALNNHRGIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQDKPLKEEAGPSANGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENYIYKCNHCDLTFPNSWSVAYHRKKVHGKAGLDEGNGATKMAKDDYRIPCRDCEEVLPNKTALYKHRKKEHSDLSLRINSVHVCHVCSKRYLSRAGLEAHARTHTARAACAHCGDSFAHAQDLHQHLKEVHGHELDFNCNVCSMRFGSRGALSAHMLTHAAARTHAAARAHACAVCGHACRTPAVLAEHARTHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACARCPKRFRVRSDLNTHRRRKHPAGLAVIEVDGLNPGPEQVMECLAANNIPHENVVEITKMSFAKGTSSVIPDSARALSLVSAPRAPVAWGRPPALNNVAAWGSPEPARRGRGIARHPRRPAILQRGAYPINTQHEELTEINIQMLLRDSTLDSQGALPLDDSLLLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00021625;
90% Identity
iTF_00325688;
80% Identity
-