Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000048.1:3446904-3449531[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.027 2.2 9.8 4.2 1 23 10 32 10 32 0.98

2 17 0.00013 0.01 17.2 1.0 2 23 58 80 57 80 0.94

3 17 2.9 2.3e+02 3.5 0.1 2 23 103 125 102 125 0.92

4 17 0.0014 0.12 13.9 0.1 3 23 132 153 130 153 0.93

5 17 0.36 29 6.3 2.0 1 10 158 167 158 176 0.81

6 17 1.7 1.4e+02 4.2 0.5 2 23 187 209 187 209 0.81

7 17 2.1e-05 0.0017 19.6 1.6 1 23 216 239 216 239 0.97

8 17 0.047 3.8 9.1 4.6 1 23 295 318 295 318 0.95

9 17 0.44 35 6.0 0.2 2 23 345 367 344 367 0.91

10 17 2.1 1.7e+02 3.9 1.0 2 23 390 412 389 412 0.93

11 17 0.035 2.8 9.5 0.0 1 23 418 441 418 441 0.94

12 17 0.00015 0.012 16.9 1.6 1 23 447 470 447 470 0.96

13 17 0.039 3.1 9.4 0.3 2 23 476 498 475 498 0.91

14 17 8.7e-05 0.007 17.7 0.5 1 23 505 528 505 528 0.97

15 17 0.00017 0.014 16.8 0.5 1 23 534 556 534 556 0.94

16 17 3.4e-05 0.0027 19.0 2.7 1 23 562 584 562 584 0.98

17 17 2.4e-07 1.9e-05 25.7 1.2 2 23 591 612 590 613 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.027	2.2	9.8	4.2	1	23	10	32	10	32	0.98
2	17	0.00013	0.01	17.2	1.0	2	23	58	80	57	80	0.94
3	17	2.9	2.3e+02	3.5	0.1	2	23	103	125	102	125	0.92
4	17	0.0014	0.12	13.9	0.1	3	23	132	153	130	153	0.93
5	17	0.36	29	6.3	2.0	1	10	158	167	158	176	0.81
6	17	1.7	1.4e+02	4.2	0.5	2	23	187	209	187	209	0.81
7	17	2.1e-05	0.0017	19.6	1.6	1	23	216	239	216	239	0.97
8	17	0.047	3.8	9.1	4.6	1	23	295	318	295	318	0.95
9	17	0.44	35	6.0	0.2	2	23	345	367	344	367	0.91
10	17	2.1	1.7e+02	3.9	1.0	2	23	390	412	389	412	0.93
11	17	0.035	2.8	9.5	0.0	1	23	418	441	418	441	0.94
12	17	0.00015	0.012	16.9	1.6	1	23	447	470	447	470	0.96
13	17	0.039	3.1	9.4	0.3	2	23	476	498	475	498	0.91
14	17	8.7e-05	0.007	17.7	0.5	1	23	505	528	505	528	0.97
15	17	0.00017	0.014	16.8	0.5	1	23	534	556	534	556	0.94
16	17	3.4e-05	0.0027	19.0	2.7	1	23	562	584	562	584	0.98
17	17	2.4e-07	1.9e-05	25.7	1.2	2	23	591	612	590	613	0.95

Sequence Information

Coding Sequence: ATGCCGTTCCGGAGATACGGAAACGTCTACAGATGCTTCTACTGCCATTTAAACTTCCAACTAGCGACCGATCTCAAACAACATTACAAAGAACACGAAGAAATTTACTTAAGAAAAGCCATTAAAAGATGTCCGCTCCGACAAGCCGTCAAACTAGATATCTCTGATTTAAAATGCAAGCAATGTGATAAAGAATTCAATTCCCTTAAAGATTTACTTAACCATCTCAATGATACACACGACGAGAAATGCTGCGTAGATTACGAATCACACATAGATTGCTTCAAACTCGCCGACGGCCAACTAAAATGTTTAATATGCGACGACACTTTCATTTTCTTCGGACCTTTACTCCTTCATACGTTAAGAGTCCACAAGCGTAAGCGAATCATATGCGAAATATGCGGACAAAATTTCGCCACGACAAGCAGTATCAACAGACACAATCAAAGCGCTCACACCACGGATAGCTACAAATGCAGACATTGCGACAAAAAGTTCTTAGCGATCCACAGGAGAGACGACCACGAGAAAAGAATACATAACATAAAAGAACGCAAATGCCACATTTGTGGGGAAATCCTCGGCAGCACATACAAAAGAGACTCCCACTTAGCTACAGTGCATGATTTCAAAACATCCGAGTTCAAATGCGAAATGTGCCCTAAGGTCTTCCGGTTCCAGAACCAGCTAGTGAAACATAACAAAAGGGTCCATTTGAAAGAGAAAACCAAAGTTTGCGATGTGTGTGGTGACAAGTTTTTTGACAATCATCTGTTGGACAGCGACGAAGAGGTCCATAAGCGAGAGGAACTCATCAAACTTCTCACCGTTATAATTCAGTGCTCAACCGCCACTCCTTTCAAATGGCACGCCAATAAGTTCATGTGTTTCTACTGCTCATGTCCTTTCGAACACAGCACTACTTTAATACAACACACGAAGGAGGAGCATGAGGATGCGAAACTTAGAACGATCTTACGTACCACGGCAACCAAAAGTCGAAGCATCAAACTGGATGTTCGGgatttgtattgtaaaaaatgtgACATCCCCATCCAAAATTTACAAGAACTTGTCAAACACTTGACAGAAAAACACGGATTGAACATGGATAAAGAAATCACGCATTGCATCTATCCATACGTTCTTTCGGAGGGCGACATGTCTTGTTTAGAATGCACGATGCCTTTCAGATTCTTCGGCCCACTGTTGATCCATACACACAAATACCATAGCAAAACTAAGCAGTTCTTATGCGAGCTTTGCGGACAAGGCTTCATCGCTCGCGCTAACGTCGATAGCCATATTAGAAACGCTCACCCCAATCTATGTACATTCCAATGCAAAGAATGCGAAGAAATCTTCCCATCTTCCTACAAACTGAATCACCACGTCGAGAAATCGCACGGTCCCGCCAGAATGAAGTGCCCGAAATGCCCAGAGATACTCACCAGCAGCTATTTAAAAAAGCGCCATCTAGCTTTTGTGCACGACGTTAAAAGCGCTCAGTTCCAATGCGACATGTGTCCCAAAATATTCACGCTGAAAAATTCGCTTTTGGCGCATAAACAGAGAGTGCATTTGAAGGAGAAAAACTTTGCCTGTGAAATATGTGGGTTCAAAGTGTTTAGTAAGGATTTGCTGCGGAGGCATATGGTTAAGCATGACGATTCGAGACCGTTTGAGTGTGATTTGTGTCAGAAGACTTTTCAGAGGAAGAAAACTTTGGAGTATCATAGAAGGATACATACGAATGATAAAAGGAATCAGTGCAAGGAGTGCGGGCGGGCGTTCGTGCAGTGGACGAGTCTGAAACTGCATATGAGAGTGCATCATTCAGTAACTAACGAAACCTGGACGGAGGATGACCAAAATATGCGAAACTAG
Protein Sequence: MPFRRYGNVYRCFYCHLNFQLATDLKQHYKEHEEIYLRKAIKRCPLRQAVKLDISDLKCKQCDKEFNSLKDLLNHLNDTHDEKCCVDYESHIDCFKLADGQLKCLICDDTFIFFGPLLLHTLRVHKRKRIICEICGQNFATTSSINRHNQSAHTTDSYKCRHCDKKFLAIHRRDDHEKRIHNIKERKCHICGEILGSTYKRDSHLATVHDFKTSEFKCEMCPKVFRFQNQLVKHNKRVHLKEKTKVCDVCGDKFFDNHLLDSDEEVHKREELIKLLTVIIQCSTATPFKWHANKFMCFYCSCPFEHSTTLIQHTKEEHEDAKLRTILRTTATKSRSIKLDVRDLYCKKCDIPIQNLQELVKHLTEKHGLNMDKEITHCIYPYVLSEGDMSCLECTMPFRFFGPLLIHTHKYHSKTKQFLCELCGQGFIARANVDSHIRNAHPNLCTFQCKECEEIFPSSYKLNHHVEKSHGPARMKCPKCPEILTSSYLKKRHLAFVHDVKSAQFQCDMCPKIFTLKNSLLAHKQRVHLKEKNFACEICGFKVFSKDLLRRHMVKHDDSRPFECDLCQKTFQRKKTLEYHRRIHTNDKRNQCKECGRAFVQWTSLKLHMRVHHSVTNETWTEDDQNMRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155534;
90% Identity: -
80% Identity: -