Acra000695.1
Basic Information
- Insect
- Archips crataeganus
- Gene Symbol
- -
- Assembly
- GCA_947859365.1
- Location
- OX402073.1:4115063-4118418[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.038 2.6 9.3 3.4 1 23 10 32 10 32 0.98 2 18 0.00061 0.041 15.0 0.3 2 23 58 80 57 80 0.93 3 18 0.0064 0.43 11.7 1.7 3 23 132 153 131 153 0.97 4 18 0.62 42 5.5 2.4 1 10 158 167 158 176 0.79 5 18 5.1 3.5e+02 2.6 0.2 2 12 187 197 187 209 0.67 6 18 1.6e-05 0.0011 20.0 1.5 1 23 216 239 216 239 0.97 7 18 0.076 5.1 8.4 0.6 2 23 246 267 245 267 0.95 8 18 1.6e-05 0.0011 19.9 0.3 1 23 273 295 273 295 0.98 9 18 0.05 3.4 8.9 4.6 1 23 369 392 369 392 0.95 10 18 0.041 2.7 9.2 0.3 3 23 420 441 418 441 0.95 11 18 2.3 1.5e+02 3.7 1.0 2 23 464 486 463 486 0.93 12 18 0.0091 0.61 11.3 0.2 1 23 492 515 492 515 0.94 13 18 0.00016 0.011 16.8 1.6 1 23 521 544 521 544 0.96 14 18 0.041 2.8 9.2 0.3 2 23 550 572 549 572 0.91 15 18 9.2e-05 0.0062 17.5 0.5 1 23 579 602 579 602 0.97 16 18 0.00018 0.012 16.6 0.5 1 23 608 630 608 630 0.94 17 18 3.6e-05 0.0024 18.8 2.7 1 23 636 658 636 658 0.98 18 18 2.6e-07 1.7e-05 25.6 1.2 2 23 665 686 664 687 0.95
Sequence Information
- Coding Sequence
- ATGCCGTTCAGGAGGTACGGGAACGTCTACAGATGCTTCTACTGCCATTTGAACTTCCAACTAGCGAACGATCTCAAAGAACATTACAAAGAGCACGAAGAAGTGTACCTACGAAAAGCCATCAAAAGGTGTCCTCTGCGACAAGCCGTCAAACTAGACATCTCCTATTTAAAATGCAAGCAATGTGATACAGAATTCGCTTCACTCAAAAATTTACTTCTCCATCTTAATGATGTACACGACGAGGATTGCTGCACAGACTACGAAGCCCACATAGATTGTTTCAAACTCGCCGATGGCCAACTGAAATGCTTGGCATGCGACGACACTTTCACATTCTTCGGACCTCTACTCCTTCACACCTTGAGAATCCATAAGCAAAAACGAATCCTATGCGAAAAATGCGGGCAAACTTTCGCTACCGAATGCAGTATCAACAGGCACAAGCAAAGCGCTCACACCACGGAAAGCTTCAAATGCAGACATTGCGACAAAAAGTTCTTAGCTGTCCACAGAAGAGACGACCACGAGAAAAGAATTCACAACGTAAAAGAACGCAGATGTCACATTTGCGGCGAAATCCTCGGCAGCACGTACAAAAGGGACTCCCACTTGGCTGCAGTGCATGATTTCAAAACGTCCGAGTACAAATGCGAGATGTGCCCCAAAGTCTTCCGATTTCAGAATCAACTGGTGAAGCATAACAAGAGGGTGCATTTGAAAGAGAAAACTAAAGTTTGCGATGTCTGTGGTGACAAGTTTTTTGATAATCATTTGCTAGGTTTGCATATGGTTAAACACAGCGACGCCAAGCCGTATGAATGTGGTGTTTGCAACAAGAAGTTTCCTAGGAAGAGAGCGTTGGATATACATACAAGGATACATACTAATGATAGGCGCCATCAAAGAAACTTCTTCGCACGGATATCTGCATGCCTAATTAAAAACACAAACCTGCACCTCCCCGACATCAAAAGTGACGCCAAATTTTCTCTAATTTCAGACACCGACGAAGAAGTCCATAAGCGAGAAGAACTCATCAAACTGCTCACCGTTATAATTCAGTACTCGACCGCCATCCCATTCAAATGGCATGCCAATAAGTTCATGTGCTTCTACTGCTCCTGTCCTTTCGAGCACAGCACCACTTTGATACAACACACGAAGGAGGAACACGAGGACGCTAAACTCCGAACCATCCTACGCTCCACGGCGACTAAAAGCCGAAGCATCAAACTGGACGTCCGCGATTTATTCTGCAAAAAATGCGACATCCCCATCCAAAATCTACAAGACCTCATCAGCCACATGAGAGAAAAGCACGGATTAAAATTGAATAAAGAAATAACGCATTGCATCTATCCGTACGTTCTTTCAGAAAGCGACATGTCTTGTTTAGAATGTACAATGCCTTTCCGATTCTTCGGCCCACTCTTGATCCATACACACAAATACCACAGCAAAACGAAACAGTTCCTCTGCGAACACTGCGGACAAGGTTTCATCGCTCGCGCGAACGTCGACAGCCACATAAGAAACGCCCATCCCGATCTATGCACATTCCAATGCAAAGAATGCGAAGAAATCTTCCCATCGTCGTACAAACTAAATCATCATGTTGAAAAATCACACGGCCCCGCCAGAATGAAGTGCCCCAAATGTCCGGAGATACTCACAAGCAGCTATTTAAAAAAGCGCCATCTAGCTTTTGTGCACGACGTCAAAAGCGCCCAGTTCCAATGCGACATGTGTCCCAAAATATTTACGTTGAAAAATTCGCTTTTAGCGCATAAACAGAGAGTGCATTTAAAGGAGAAGAACTTTGCTTGCGAAATATGTGGGTTTAAAGTTTTTAGTAAAGATCTACTGCGACGGCATATGGTTAAGCATGACGATTCGAGACCGTTTGAGTGCGATCTGTGTCAGAAGACTTTTCAGAGGAAGAAGACTTTGGAGTATCATAGGAGGATACATACGAATGATAAGAGGAACCAGTGCAAGGAATGTGGGCGGGCGTTTGTGCAGTGGACGAGCCTGAAACTGCATATGAGAGTACACCATTCTGGAACCAGCGAAACATGGACGGAAGATGACCAAAATATGCGCAACTAA
- Protein Sequence
- MPFRRYGNVYRCFYCHLNFQLANDLKEHYKEHEEVYLRKAIKRCPLRQAVKLDISYLKCKQCDTEFASLKNLLLHLNDVHDEDCCTDYEAHIDCFKLADGQLKCLACDDTFTFFGPLLLHTLRIHKQKRILCEKCGQTFATECSINRHKQSAHTTESFKCRHCDKKFLAVHRRDDHEKRIHNVKERRCHICGEILGSTYKRDSHLAAVHDFKTSEYKCEMCPKVFRFQNQLVKHNKRVHLKEKTKVCDVCGDKFFDNHLLGLHMVKHSDAKPYECGVCNKKFPRKRALDIHTRIHTNDRRHQRNFFARISACLIKNTNLHLPDIKSDAKFSLISDTDEEVHKREELIKLLTVIIQYSTAIPFKWHANKFMCFYCSCPFEHSTTLIQHTKEEHEDAKLRTILRSTATKSRSIKLDVRDLFCKKCDIPIQNLQDLISHMREKHGLKLNKEITHCIYPYVLSESDMSCLECTMPFRFFGPLLIHTHKYHSKTKQFLCEHCGQGFIARANVDSHIRNAHPDLCTFQCKECEEIFPSSYKLNHHVEKSHGPARMKCPKCPEILTSSYLKKRHLAFVHDVKSAQFQCDMCPKIFTLKNSLLAHKQRVHLKEKNFACEICGFKVFSKDLLRRHMVKHDDSRPFECDLCQKTFQRKKTLEYHRRIHTNDKRNQCKECGRAFVQWTSLKLHMRVHHSGTSETWTEDDQNMRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00325669;
- 90% Identity
- -
- 80% Identity
- -