Cros024872.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Choristoneura rosaceana
Gene Symbol
-
Assembly
GCA_037349165.1
Location
JAZBNJ010000036.1:14499825-14509837[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.013 1.1 10.8 0.6 3 23 729 750 728 750 0.96
2 23 0.69 55 5.4 0.2 1 21 1131 1151 1131 1152 0.96
3 23 9.5 7.6e+02 1.9 0.3 1 22 1194 1215 1194 1217 0.82
4 23 0.0016 0.13 13.7 0.7 3 21 1228 1246 1226 1247 0.95
5 23 0.97 77 5.0 0.3 3 23 1256 1277 1254 1277 0.91
6 23 0.01 0.83 11.2 0.2 3 23 1297 1318 1295 1318 0.96
7 23 0.016 1.3 10.6 2.4 1 23 1324 1347 1324 1347 0.92
8 23 0.18 14 7.3 0.0 1 23 1373 1396 1373 1396 0.90
9 23 0.026 2.1 9.9 3.4 1 23 1401 1423 1401 1423 0.97
10 23 0.027 2.2 9.9 0.3 1 23 1429 1452 1429 1452 0.95
11 23 0.0033 0.26 12.7 1.3 1 23 1465 1487 1465 1487 0.97
12 23 0.00025 0.02 16.3 1.8 1 23 1536 1559 1536 1559 0.97
13 23 0.0096 0.77 11.3 1.8 1 23 1632 1655 1632 1655 0.96
14 23 0.0016 0.12 13.8 2.1 2 23 1680 1702 1679 1702 0.95
15 23 0.12 9.8 7.8 0.1 2 23 1708 1730 1707 1730 0.93
16 23 0.0092 0.74 11.3 0.3 1 21 1771 1791 1771 1792 0.95
17 23 0.0017 0.14 13.6 0.6 1 23 1802 1824 1802 1824 0.93
18 23 0.00016 0.013 16.9 0.3 2 23 1918 1940 1918 1940 0.93
19 23 4.7e-07 3.7e-05 24.8 1.4 3 23 1947 1967 1946 1967 0.98
20 23 0.011 0.92 11.0 0.4 3 23 1990 2010 1988 2011 0.95
21 23 0.13 11 7.7 0.0 1 23 2032 2054 2032 2054 0.98
22 23 0.039 3.1 9.4 0.6 1 23 2060 2083 2060 2083 0.95
23 23 0.00072 0.057 14.8 0.5 1 23 2091 2114 2091 2114 0.95

Sequence Information

Coding Sequence
ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCACGTCCTCGCATCGAAAATCAAGGATTGCGTGGCCGTTCAGATAAACGAGAATGACGACCTGCCTACTAATGCCTGCAGAAAATGCGTGGACAATGTCAATAACTGGCATATATTTAAGACAGTATGTGAAAGGACACAAAACAAACTACAGTCTCTGATTAAAAAAGATGGCAGCCAACTAGAAGAGCTGAATATAAAAAGTGAACCACTATCAGATGAAGCCTATGATGATGGAGTGGTTATTGATGGAGCCTATAGAGACGAGGCCTCTGGTGCCAGCAAAGTGCAGCCCGAAGGCCCTCCTATCTTGGCTTCGCTGGGACTCACGCCGCGGAGTGATAAGAATTATATTGACCCTAGGATGGATTGGCACCGGGTCCATGCTATTTTGGATATGGTTCAAGATGATGATGTTATCAACTCGTTGCAGTCTGCAGAAGAATGTGACATACTGCAACATTCAGATCATGATTCAGACTCTGACATAGAACTGGAATGTGACCTTGATGACACATATGTTGATTGTAAAAATGGATACAAGTTGAGAAACCAGAGAATAATTTCAAAGAGACCATTGATATCTCATACTGAAAATTACCCAAAGATTAGGGATGCTATTGAGTTAAGAAAGAGAAACAATAGAGAGTTCAAACCTTGTCCGCAACCTAAACATGCTTGGGAGTTAATCTTTACTAATGACTTACTTGAAAGGATTGTCTTGGCCACAAATGAAAACATCACCAAAAATGGCAGAAGCTTTTCCTGCGGCACCAATATTTCCGAAATAAAAACGCTGATCGgcatattatattttcatgGCATAATGAGACCAACACATCAAAAATTTAAAGAGTTATGGCATGGTGAATATGGTTTAACTTGCATTAAAAATGCTATGAACTATGAAAGATTGAAGTTTCTTCTAGAGAACTTGCATttttataatgatgatgatgaaaacctcATACAGGTCGACATTATGACGCAGATGCGTACGGTGTTGGAAATATTTACTTTGAATTGTCGATCAGCGCATGACATTGAGGATCTTGCAGTTATTGACGAGATACTTGTACCTGTCTTTGGGCCTGCTTCATTCAGATTCGATATAGAAAGAAAGCCAATTAAATCTGGTATTAAAATGGTGCTGCTAGTTGATCCTACTAACTTTTATATAAGCAATTTGGATGTCATTACTGATTCATATTTTGGAGCGGATGAGATAGTTACTAAATTAGTACAACATTTGGCTGGAACTGGCAGAGTAATAGTCATGGACGGCTGGTTTTCGTCATACACCTTGATTGAGAAATTGAAACATGAATACAAACTCTTTTGTTTAGCAGCTCTGAAACAAAAAGAAGAGATTATCCCACCATTCTTTCTGTCCCGAGATAGGATGGCCAAACCAGTTTTGGTGGGATATTTAGATGATGGTTATACATTAACTTCTCAGATCACTTCTAAAACAAAGTCAGTCAATGTGCTGACCAATGATCCGAAGTATAACAGAAAAGGTCTGTTCAAGAAAACATCTGCGGCAACTGAATATAAGCGGAACCAATCTGCAGTTGAAGTTGTAGATGTGCTGATGCATTATTATACAACCATGCAGTATACAAACAGTTGGATGATGTCATTGTTCTTCTCATTACTTAACATAGCTTCTGTTAATGCTCAAGTGATTTGGTCAACTTATAACACGCAGGATGTTGTGAAGCGAAGATTGTTTATACAAGAGCTGGCTCTAAGCCTGATGAATGCAGATGTTTCATTCCCAATGTCTCCAATCAATCAAGCTTTAATGCAGTGTAGATCTAAGGATAAAACAAGAAAACGTTGCAAACTTTGTGCTAAAACTACTAAACGCGATAGGCGCACTAAGCAATATTGCATGCGGTGCCGCTCACCAGGCGTTGAGAGCGAAAAAGACGAGGAAGAAGACGAAGATGATGAAATGATGGAACCAGCCCCGCAGTACAATAAAGTAGCAAGCATGCCTGAGGTATCCATCACAGTGATGCGGCCGACGGGAGAGACGCTACACGCGCGTCAGGGCATTCAGCAACTTGCCAGCAAGGATTGCCTCGTCTGCGGCCGCGCCTACCGCTATTCGCACAACGCGCGCCGTCATGAACTTACCGCACACAGCTTCGACAGGTACACCAACAAAATTAAcaccaaaaaaacaaaaacgcaCATGCAACCCAAACTTAGACTGAACCCGTTCAACCCCAAAGCTCGACTCATGCCCAACCCCATTAGCCACAAAATGCAATTCCAAAAACCGATGCCTACTCGTATCATGCCATCTAGAGTTGTCGCCCCACCGAAACCGATACCGATCAAAACGTCTAAACCCGTACACAACAATCTACCTTATCCTTTGCGAATAAAAGCACTCAAGGACTTGCAAATCAAGAAAAAAGAACCGCAAATTTTGAAAACTTTGCTCACGTCGAAACCAGAATATTTGGTTTCCGAACCTGCTATTATTAATTCGGGCCCGGAAAGTCCAGAAACTTTAATATCGGAGCCAGAGATTGCTTCATTCCAAGTTGAAACGATCTTGTCTGAACCAGGCTTTGATCAAAACAACGACGAAGAAGAAGCTGATGAATCgcaaaatcaaaatcaacaTTATGATACTGTTGATATGGAATCTGATCATGAAATTGAGATCGCGCGTCAAAAAGAAAACGAGGTTGAAATGGATGAAAATCAGGGTGAACACGATGAAGATGAAATACAACATGAGAATGAGAATTTGGATAATACAGAAGGTGAGATGAGCGATAATGAGAACGGACATCAAGAGGAGGACGACGAGCAAGGTGAAAGTCAAGGCGATATGATAATAGACGAGCACAATGAAGTTCAAGGTGAAGATGGTGAAGGAGAAAATGACGACGACAACGGAGATAGAGAGGAAGACCAAGACGGCAAtgaagaaaatgaaaatgagGAGGATGAAGATCTTCCTCCAGGGTTAGCACCTGTCGTTGAAATTAACGAAGACATGCAAACTAACTCTTATAATAGTGAACAAAATGAAGAAGAGGAGGAAGAACTCGATGAATCAGCTGCCAATGACACCATCGACGAAGACGTCAAGGAGCTAGACCCTGACAAGATATACGTCACGAAAACTCAGAgagattttattcaaaagtaTAGAGACATTATACAACAGATTAATACTAAGCGATGTCTCTGCTGCGATAGGGAACATCCTCGCAGAAAAGCTGTTATCCAACATCTTCAGAAAAATGGACATAAAGTACCGAAACATACATGTTACAATTGCGTTGTAACATTCGGTCATATTGGCGCATTACTCAGCCATATGCGTGCCAATGTTTGCACAGATCTATGGAAGATAATCTATAACGAAAATGGAATTACTGATGATTTGGTTATGGAAGATGAGCCCAAAGATAATAAAGTGCAATATAAGGATATTTTCAATGCCAGATCGTATGCTTGTAAACTGTGTCCGGCTAAGTTCCAATTGAAACAGTTTATCATGAAACACGTTCTGGATGTTCATGAAGATGGTCAATCCAGGGTGCCAATGGCCTGCGTACACTGTGGGTCGAGGTTCAAGGACAAATCGTTGTGGAAGAGACACATTCGGAATGGAGAATGTACAGTTTATATTGCATGCGATCTTTGCTCTGAAAAATTCGTAAATATGCAAGATTTTAATGACCATGCTCTTCATGTGCATGCTGGGAGCTTCGACCCTGATAACCAGAATAAATGCATCGACGGCCGTCCTACAGATTGTCCTCTGTGCGGTAAAAAGAATAGCAACTACCCGAATCTGGTGAAACATATAAAGTCAGCTCATAATGAAGACAAGCCTCATTATTGTCAACACTGCGATGCAAAATTTGAGCAAACTCCCGatttgaataaacatatttatgcTCAGCATTCAGATAAAGTGATGGGTGCACAAGCAATGGAACCAGATATGTCAATCATCAAAGAAGAAGCTGAAGAATATCATTATTCGTGCACGGAATGCAACGCTATATTCGAAACTGTCGACGCCTGGACGGACCATCAGGTAGCTGAACACAATCAAGTCGCCCACCACTGCGACCAGTGTGAAAAGAAGTTCTTGCGGCCCTCAGAGCTAGCAGAACATAAAAACACTCATTTGAGGGTTAAATTCTATCCTTGCAGTGTTTGCTCTAATTCATACAGTACTCCTCAAAAGTTATCTGAGCATGTGCAACAGTCCCATCCGGGTGCCTCGGCTTACGCCGCAGCCGAGACTGAATTCTTTTGCGACATCTGCATTCGGTCATTCAAAAGCCGTCAAGCATACTCTAACCATATGCGCATACATGCCAAAGTGCCAACCACCAACAGGAAGCCTGGTGAGCCTAAAGGTTTCGCTCCACAAATTATTGGCAAGCCTATCCGCCAGTTCCCTATGATCCAACCGGGCTTGGTCTCATTCAAGCCCAATTGTAATGTTCCTAATGCTCCTTATTCTTGTGACATTTGTGGAAAAGGTTTCATGCATAAGAAGAATATATGGAAACATAAGAAGGTGTTGCATGCCGACCTCCTGAATGAACGTAATGATAGTGAAGACAACACCATGCAGGCATCTACCGAAGAAGACGAATATAATGTTGACGAAAACGGCACTGCATTGTCGACGCCACAGTTCAACAGTTTTAATTTCTCTAACTTTGCTAATAATGTTCAACAACAACAGCAGCAACAACAGCAGCAACAACAGCAATCGACGCCAACAAATGACGCTTTGCCTTTCTCTTGCGAACTTTGTTTCAAACGTTTCCCGCTTCGAACAAGTTTGTGGAAACACAAACGCGCCAAACACGGTATCATTAACGCGAGCGCGACCGGCAATCCCGAGAATCAAGCCCAACCATCTTCGGAAGGTGGTAGATCCAGCTGCACAATTTGCAAGATCACATTCTCCGATAAAAAGTCATACTATCGCCACAGGAAAAACGTGCACAAATCCACAGCGCAAATGTGTAAGATTTGCGGTAAACCGCTCAACTCGACTTTGGAATTGTATGAGCATTTGAAGGCTGCTCACGCCCGGGAATTACTGGGATACAATGCTAATCAAGGCACAAGTAAAATACAAGAAGAGGTGAAAATAGAATACGAACCCGAACCGGAAATAAATGATCCGAGCGCTGAGTATCAAGCGCGTTACCCGTGTGATACTTGTGGCAAGCAATTCGTAGGGCTTCTGTCGTTGCAAAACCATCAATGTATAAACCAAACTACTTCAGAGCCTCAAACTTTCGACTGTGAAATATGCCACAAGAGTTACACTTCGATAGCAGCGTTGAAGAGCCACCGCGGCTGGCATTTGCGCTCTCCTGACGGTAAGGCTGCTGCAAACAACAGCGGCTTATGGATGCCGCAGCACAAAGTAACTAGCAAAGTCAGTAAGCATGAAGTCGTTGATGCCTCACAACTTGCGAGAGTTACTCATTCCGCGCCCACCGCAACCACTACAACTTCTAATAAACGACGGCTACCACCAGAAGTGGAGGTAACTGTTGTCAACCCTAACAAGAAAATGAGATCAGACGATTCTATGGAACTTGAACAGCAGAATAGTTTAAGCGGAACACTAGAAGATCGTTATTGCACTATCTGCGACAAAGAATTCACCAAAAGGGCGGCTTACCAGCGCCACATGGACGAAGTGCACCAGCCGAACTCTGTGTTCTGCCCGGTGTGCGATAAGAGCTTCACTCGCAAATCCACTCTACTCGTCCATATGAAGAAGCATTACGGTGGCGACGGGGAAGGAAGTTCGAGCGCGATCGGTCAGACGGCTGACGATGACATGTACGGGTGCGATCAGTGCGGGACTCAGTACAACAGCGAGGCGGCGTTGCGGGCGCACCGAGCACGGCACCATGGGGAGGACTCGAACGAGTCCGAAGACGACGGTAATGTGCCAATAGCGCAGCCCGGAGAGTTCACCTGCGGCCAGTGCGGGGACGGCGTCGCCACTCCGCGCGATCTTATCGCCCACCGATCCATGCACGCGACACCGACCAAATTCTTCTGCAACATTTGCAAAGTTTACTTTGCACGTGCTCTGGATCTCTCCTCTCACACTCGGGCGAGGCATTCCGACAACGAAAAAGTGTTCTTCCCCTGTGCCATGTGTGACCGCTTCTACATGAACAAGAAGAGTTTACAACGACATATTGATGTGTCTCACTGA
Protein Sequence
MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPHVLASKIKDCVAVQINENDDLPTNACRKCVDNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEELNIKSEPLSDEAYDDGVVIDGAYRDEASGASKVQPEGPPILASLGLTPRSDKNYIDPRMDWHRVHAILDMVQDDDVINSLQSAEECDILQHSDHDSDSDIELECDLDDTYVDCKNGYKLRNQRIISKRPLISHTENYPKIRDAIELRKRNNREFKPCPQPKHAWELIFTNDLLERIVLATNENITKNGRSFSCGTNISEIKTLIGILYFHGIMRPTHQKFKELWHGEYGLTCIKNAMNYERLKFLLENLHFYNDDDENLIQVDIMTQMRTVLEIFTLNCRSAHDIEDLAVIDEILVPVFGPASFRFDIERKPIKSGIKMVLLVDPTNFYISNLDVITDSYFGADEIVTKLVQHLAGTGRVIVMDGWFSSYTLIEKLKHEYKLFCLAALKQKEEIIPPFFLSRDRMAKPVLVGYLDDGYTLTSQITSKTKSVNVLTNDPKYNRKGLFKKTSAATEYKRNQSAVEVVDVLMHYYTTMQYTNSWMMSLFFSLLNIASVNAQVIWSTYNTQDVVKRRLFIQELALSLMNADVSFPMSPINQALMQCRSKDKTRKRCKLCAKTTKRDRRTKQYCMRCRSPGVESEKDEEEDEDDEMMEPAPQYNKVASMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKINTKKTKTHMQPKLRLNPFNPKARLMPNPISHKMQFQKPMPTRIMPSRVVAPPKPIPIKTSKPVHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEYLVSEPAIINSGPESPETLISEPEIASFQVETILSEPGFDQNNDEEEADESQNQNQHYDTVDMESDHEIEIARQKENEVEMDENQGEHDEDEIQHENENLDNTEGEMSDNENGHQEEDDEQGESQGDMIIDEHNEVQGEDGEGENDDDNGDREEDQDGNEENENEEDEDLPPGLAPVVEINEDMQTNSYNSEQNEEEEEELDESAANDTIDEDVKELDPDKIYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANVCTDLWKIIYNENGITDDLVMEDEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPMACVHCGSRFKDKSLWKRHIRNGECTVYIACDLCSEKFVNMQDFNDHALHVHAGSFDPDNQNKCIDGRPTDCPLCGKKNSNYPNLVKHIKSAHNEDKPHYCQHCDAKFEQTPDLNKHIYAQHSDKVMGAQAMEPDMSIIKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQSHPGASAYAAAETEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIIGKPIRQFPMIQPGLVSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNERNDSEDNTMQASTEEDEYNVDENGTALSTPQFNSFNFSNFANNVQQQQQQQQQQQQQSTPTNDALPFSCELCFKRFPLRTSLWKHKRAKHGIINASATGNPENQAQPSSEGGRSSCTICKITFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGTSKIQEEVKIEYEPEPEINDPSAEYQARYPCDTCGKQFVGLLSLQNHQCINQTTSEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDASQLARVTHSAPTATTTTSNKRRLPPEVEVTVVNPNKKMRSDDSMELEQQNSLSGTLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSSSAIGQTADDDMYGCDQCGTQYNSEAALRAHRARHHGEDSNESEDDGNVPIAQPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIDVSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01135995;
90% Identity
-
80% Identity
-