Cros016542.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000022.1:3063792-3067151[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00018 0.015 16.7 0.7 2 23 84 106 83 106 0.94 2 17 0.00065 0.052 15.0 1.2 1 23 136 158 136 158 0.97 3 17 9.2e-07 7.4e-05 23.9 4.2 1 23 164 186 164 186 0.98 4 17 0.22 18 7.0 6.4 1 23 192 214 192 214 0.97 5 17 0.003 0.24 12.9 4.1 1 23 220 242 220 242 0.97 6 17 0.00024 0.019 16.3 2.8 1 20 248 267 248 270 0.93 7 17 0.00023 0.019 16.4 1.6 1 23 276 298 276 298 0.96 8 17 1.9e-06 0.00015 23.0 0.2 1 23 303 325 303 325 0.98 9 17 0.00047 0.038 15.4 0.3 1 20 331 350 331 352 0.93 10 17 0.00055 0.044 15.2 1.9 2 23 423 444 422 444 0.97 11 17 1.4e-06 0.00011 23.3 3.5 1 23 450 472 450 472 0.97 12 17 0.00028 0.022 16.1 5.2 1 23 478 500 478 500 0.98 13 17 1.3e-05 0.0011 20.3 6.5 1 23 506 528 506 528 0.97 14 17 2.8e-05 0.0023 19.2 3.1 1 23 534 556 534 556 0.98 15 17 5.5e-05 0.0044 18.3 0.9 1 23 562 584 562 584 0.95 16 17 6.2e-07 5e-05 24.5 2.2 1 23 590 612 590 612 0.98 17 17 1.5e-05 0.0012 20.1 2.3 1 23 618 640 618 640 0.98
Sequence Information
- Coding Sequence
- ATGTCGCTAGAAAGTGTTAAAGTTAAGGTTGAAGCTGATTGGCAGGAGGATTTATCTGGCGAGAGTGAGGCATCGGTGTCAACAAGCTTGTACCAAAGCCATGTCGTTAAGGGCGAGATTGTACAGGGACCAGACTTGGTGGAAATCCAAGTACCATCAATACAAGACACCTTAAATGAAGTGAAGCAAGAGCTTATGCAAGCTAATGCCAGAAAAAACATACTTCATCCTGGTCACATCCACTCTTGGTCCTGTGACACATGCAGTGAAGTGTTTTCTGATAAAATTCTCTTAAAACATCATATAAAAGAATTACACACTGTGAGCAGACATGCCACCGAGGCAAGCAATGAGTGTAACACAAATGAAAGAAGACACGAGGTTCATGAAGATGATAAAGAGTTGTTCGCATGTGAAATATGTGACAAACAGTTTCAATTCAAGTCTCAAATAGAATCCCATAAAAAAATGCACACAGGAGAAAAACCACATGTCTGTGACATATGCAAGAAACGTTTTTCCTTTAAGACTAATTTGAAACAGCACATGCGGATACATACTGGAGCGAAACCATTTTCTTGTGACATTTGCAATAGACAGTTTCGTTGTCAGTCTCATATGATAGAACATAAGTTTACCCATACGGGGGAGAAGCCCCATAGTTGCAAAGTCTGTGAAAAACAGTTCTTGCGCCGGCATCAATTGGTTAAGCACATGATAGTACATACAGGAGAGAAACCTTATGCTTGTAATATTTGCAATAAACAGTTCCAACATCAGTCACACTTAGCGAAACATAAACCTGTCCATGCAGCTGAAATGCCGCACTGTTGTACAGTCTGTGAGAAACGGTTTAAAGAAGAACCACAACTAATTGCTCATATGCTAGTGCATGACGAGAGACAGTATCCTTGTGAAGTATgcaatgaaatttttaaacagAAAATACAGTTGACTAAACATATGTTAATACACACAGGACCGACCCCTTTTCCCTGCAAAGCTTGCGGGAGACAGTTCTCGCAGAAATCAAACGCGACCCGCCACGAGCTCCGCTGCGATGGCACCCCTCATAAAGTTATTCCATCACCATTCACGCCGACACAAACATCAGTTACTCTTCTACCATTGTCTGTTCCGCAGACATCTGGTGATCCACAAGCCTTGAGCGGGACTATAGGCATAAAGACTGTTAGAAGCGAAACACACGCACTCTTATTAGAACTTAACACGCAAGCATATCTAGAGCGTGAGAAAGAATTGTTGACATGTGAAATTTGTAACAAACAATTCCAATTTAAATCTCAAATAGAATCTCATAGGAAAACTCACACAGGTGAAAAGCCCCACGTTTGTGAGATATGTAACAAACGGTTTTCATTTAAGACTAATTTAAAACAGCATTTGCGAATACATACTGGAGCGAAACCGTATTGTTGTGAAGTTTGCAATAGACAATTTCGGTATCAGTCTCACTTAGCGGAACATAAGCTTACCCATTCGGGGAAGAAACCGCACTGTTGCAAAATCTGCGGCAAAGCGTTTACACGGAGGCACCAGTTGGCTACGCATTTACTTACACATACCGGAGAAAAGCCCTTTTCCTGTGATATTTGCAATAAACGGTTCCGATACCAGTATAACGTGCTGAAGCATAAGCGTCTCCATATTACGGAAATGCCTCACGCTTGCAAAATCTGTCAGAAAAGGTTTAAAGAAGAACCGCAACTCACTGCCCATATGCTCCTCCATGAAGGCGAGAAAAAACACAAATGTGAAATCTGTGACGAAAAATTTAAACAGAAAGTTCAGTTGACTAAACATATGTTAATACACACGGGTCCGACGCCTTATTCGTGCAGTGTTTGCAGTAGAAAGTTCTCGCAAAAGTCAAACGCAACCCGGCATGAACGTAGCCATGCTACTAAGGCCGCTAAGGCCAAAGAAGCCGCAGCCACGACGTTCAGCATAAAGACTGTTAGAAGTGAAAATCAGGCACTATTACTAGAAGTTGGCACTATCCTCAAATTGCCGGAGTAa
- Protein Sequence
- MSLESVKVKVEADWQEDLSGESEASVSTSLYQSHVVKGEIVQGPDLVEIQVPSIQDTLNEVKQELMQANARKNILHPGHIHSWSCDTCSEVFSDKILLKHHIKELHTVSRHATEASNECNTNERRHEVHEDDKELFACEICDKQFQFKSQIESHKKMHTGEKPHVCDICKKRFSFKTNLKQHMRIHTGAKPFSCDICNRQFRCQSHMIEHKFTHTGEKPHSCKVCEKQFLRRHQLVKHMIVHTGEKPYACNICNKQFQHQSHLAKHKPVHAAEMPHCCTVCEKRFKEEPQLIAHMLVHDERQYPCEVCNEIFKQKIQLTKHMLIHTGPTPFPCKACGRQFSQKSNATRHELRCDGTPHKVIPSPFTPTQTSVTLLPLSVPQTSGDPQALSGTIGIKTVRSETHALLLELNTQAYLEREKELLTCEICNKQFQFKSQIESHRKTHTGEKPHVCEICNKRFSFKTNLKQHLRIHTGAKPYCCEVCNRQFRYQSHLAEHKLTHSGKKPHCCKICGKAFTRRHQLATHLLTHTGEKPFSCDICNKRFRYQYNVLKHKRLHITEMPHACKICQKRFKEEPQLTAHMLLHEGEKKHKCEICDEKFKQKVQLTKHMLIHTGPTPYSCSVCSRKFSQKSNATRHERSHATKAAKAKEAAATTFSIKTVRSENQALLLEVGTILKLPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156456;
- 90% Identity
- -
- 80% Identity
- -