Axyl001773.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387352.1:3892039-3894581[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0011 0.08 14.2 0.1 2 23 92 114 91 114 0.94 2 17 0.015 1.1 10.6 1.7 2 23 147 168 146 168 0.96 3 17 5.7e-08 4.1e-06 27.7 2.1 1 23 174 196 174 196 0.99 4 17 0.49 35 5.9 6.9 1 23 202 224 202 224 0.97 5 17 7.1e-05 0.0052 17.9 4.5 1 23 230 252 230 252 0.97 6 17 0.00035 0.025 15.8 2.5 1 20 258 277 258 280 0.93 7 17 3e-05 0.0022 19.1 0.2 1 23 286 308 286 308 0.96 8 17 2.9e-06 0.00021 22.3 0.2 1 23 313 335 313 335 0.98 9 17 4.2e-05 0.003 18.7 0.6 1 20 341 360 341 362 0.93 10 17 0.00055 0.04 15.2 1.9 2 23 433 454 432 454 0.97 11 17 1.4e-06 0.0001 23.3 3.5 1 23 460 482 460 482 0.97 12 17 0.00013 0.0097 17.1 5.1 1 23 488 510 488 510 0.98 13 17 0.00049 0.036 15.3 7.9 1 23 516 538 516 538 0.97 14 17 2e-05 0.0014 19.7 2.9 1 23 544 566 544 566 0.98 15 17 0.0003 0.022 16.0 0.6 1 23 572 594 572 594 0.95 16 17 3.7e-07 2.7e-05 25.1 1.7 1 23 600 622 600 622 0.97 17 17 4.3e-06 0.00032 21.8 1.5 1 23 628 650 628 650 0.98
Sequence Information
- Coding Sequence
- ATGTCGGTAGAGAGTGTGCAAGTTAAAGTAGAAGCTGATTGGCAGGAGGGTTTATCCGGCGGCGAAAGTGAGGCATCAGGGGCATCAAACTTGTACCAGAATCATGTCATTAAGGGCGAGATTGTACAAGGACCAGACCTGGTGGAAATCCAAGTACCATCAATACAAGAAACCCTAAATGAAGTCAAGCACGAGCTGATGCAAGCCAGTACCAAAGAATTGCCTAATGAGACTAGCGAAATTGATCCAGATCCTGGTGACATCCACTCATGGTCTTGTAACAATTGCAATGAAGAGTTTCCTGATAAAATTCTTTTACAGAATCATGTAAAAGAAATACACACAGCAAACAAACACACCAGTGAGGCAAGCAATGAGACATGTAACACAAACGAAAGCGGGCAGGAGGTTGTTAATGAGAACGAAAAAGATTTGTTGACGTGTGAAATTTGTAACAAACAGTTTCAATTTAAGTCACAGATAGATTCCCACAACAAAACGCATACGGGAGAGAAACCATATGTTTGTGAAATATGTAACAAACGGTTTTCCTTTAAGACTAATTTAAAACAGCACATGCGCATACATACAGGAGCTAAACCGTTTTCTTGTGACATTTGTAAAAGACAATTTCGTTGCCAGTCTCACATGATAGAACATAAGTTTACCCATACAGGCGAGAAACCCCACACTTGCAAAATCTGTGAAAAACAGTTCATGCGGCGGCATCAATTGGTTAAACACATGATAATTCACACAGGGGAAAAGCCCTATGCGTGTGATATCTGCAATAAACAGTTCCAACATCAGTCTCATTTAGTGAAACATAAACCCATTCATACAGCTGAACGACCACATGCTTGCACAGTCTGTGACAAACGGTTTAAAGAAGAGCCACAGTTAATTGCTCATATGCTAGTGCACGACGAGAGGCAATACCCCTGTAAAGTCTGCGACGAAATTTTTGAGCAGAAAATACAGTTGACCAAGCACATGTTGGTACACACTGGTCCGAATCCTTTTTCCTGCAAAGTTTGCGGTAGACAGTTCTCGCAGAAATCAAACGCAACACGGCACGAGCTTCGTTGCACGGGAGCCCCCGTTAAAGTTACTCCGCAACCATATACCCCTACACAAACATCGGTCACTCTGCTACCGTTACCCGATCCACAGGCATCTAGTGATCCACAAGCGTTGAACGCAACAATAGGCATAAAGACTGTAAGAAGCGAAACACATACACTCCTCTTGGAGCTCAATACGCAGGCGCATCTGGAGCGCGAAAAAGAGTTGTTGACGTGTGAAATTTGCAACAAACAGTTTCAATTTAAATCACAGATAGAATCTCATAGAAAAACTCACACAGGAGAAAAACCGCACGTTTGCGAAATATGTAATAAACGGTTTTCTTTTAAGACTAATTTAAAACAGCACCTGCGCATACATACAGGAGCTAAACCATATTGTTGTGAGGTTTGTAACAGACAATTTCGGTATCAGTCTCACTTGGCAGAACATAGGCTTACCCATACAGGGAAGAAGCCGCATTGTTGCAAAATCTGTGAAAAACAGTTTACACGGAGGCATCAGTTGGCTACACACTTGCTTACACATACCGGAGAAAAGCCCTATTCGTGCGACATTTGTAATAAACGGTTCCGGTATCAGTATAACGTGTTGAAGCACAAGCGTCTCCATGTTGCCGACATGCCACATGCTTGCAAAGTCTGTGAGAAAAGGTTTAAAGAAGAGCCGCAACTTAGTGCTCATATGCTTCTCCATGAGGGCGAGAAACAACACTCCTGTGAAATCTGTGACAAAATATTTAAACAGAAAGTACAGCTGACTAAGCATATGTTGATACACACGGGACCTACTCCATATTCGTGCAAAGTTTGCGGTAGACAGTTCTCACAGAAGTCGAACGCAAGTCGGCATGAACGTAGCCACGCTAATAAGTCCGGTAAAGCCTCCAAAGAAGCAGCTCCAACAATAAGCATTAAGACTGTTAGAAGCGAATCTCAAGCGCTACTCCTGGAAGTAGGCACTATCCTCAAACTCCCGCAATGA
- Protein Sequence
- MSVESVQVKVEADWQEGLSGGESEASGASNLYQNHVIKGEIVQGPDLVEIQVPSIQETLNEVKHELMQASTKELPNETSEIDPDPGDIHSWSCNNCNEEFPDKILLQNHVKEIHTANKHTSEASNETCNTNESGQEVVNENEKDLLTCEICNKQFQFKSQIDSHNKTHTGEKPYVCEICNKRFSFKTNLKQHMRIHTGAKPFSCDICKRQFRCQSHMIEHKFTHTGEKPHTCKICEKQFMRRHQLVKHMIIHTGEKPYACDICNKQFQHQSHLVKHKPIHTAERPHACTVCDKRFKEEPQLIAHMLVHDERQYPCKVCDEIFEQKIQLTKHMLVHTGPNPFSCKVCGRQFSQKSNATRHELRCTGAPVKVTPQPYTPTQTSVTLLPLPDPQASSDPQALNATIGIKTVRSETHTLLLELNTQAHLEREKELLTCEICNKQFQFKSQIESHRKTHTGEKPHVCEICNKRFSFKTNLKQHLRIHTGAKPYCCEVCNRQFRYQSHLAEHRLTHTGKKPHCCKICEKQFTRRHQLATHLLTHTGEKPYSCDICNKRFRYQYNVLKHKRLHVADMPHACKVCEKRFKEEPQLSAHMLLHEGEKQHSCEICDKIFKQKVQLTKHMLIHTGPTPYSCKVCGRQFSQKSNASRHERSHANKSGKASKEAAPTISIKTVRSESQALLLEVGTILKLPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00325636; iTF_00155510;
- 90% Identity
- -
- 80% Identity
- -