Cros009241.2
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000012.1:3425196-3427644[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-10 3.9e-06 27.6 0.0 217 275 2 60 1 60 0.95 2 2 0.41 3.6e+03 -1.8 0.0 78 188 77 102 62 114 0.42
Sequence Information
- Coding Sequence
- ATGCTGCACCAGCACGTCGTGCCCAAGCTGGAGCACTGTCTGCAGACCGCGCCCGTCCACCTCGTGGGCAGGGAGAACACGGCATGGGGCTGGTGCGCGGAGTGGGAGGAGCTCCTGGGGGCTCCGACGCTCGCGGCCatagcggcgcgcgcgctgctgccgCGCTGGCTGGCCGCGCTGGCCGCCTGGCTCAACACGCAGCCGCAGCACCGCGCCGTGCTGAACAGCTACACGCAGTTCAAGAAAATGTTCTCCGAAGACCTCTTAAAAGAGCCTGGCGTCCGGGACGCCTTCAGAAAAGCCCTCGACATGATGAACCGAAGTGCAGACATCGACTCAGTCGAACCACCGCCCCCACCCCGCTTCACCATCCCCGTGGAAAAGAAGGAAACCTCCAAGATCGCAGACGTTCTTGCCTCAGTGACACAGCAAAAATCATTCTCAGAACTTCTGGAGTCCCGGTGTATTGAAAGAGGGATTACTTTCGTTCCCATAGCCGGTAAGACGAGGGAAGGAAGGCCGTTGTATAAAATTGGGGCGGATATGCAGTGCTATGTTATAAGGAATGTCATTATGTATTCCCAGGATAGTGGTAGGACTTTTGAGCCTGTTGGGTTGGACAGGCTTTTAGGGTTGGCGGAGGAGTAA
- Protein Sequence
- MLHQHVVPKLEHCLQTAPVHLVGRENTAWGWCAEWEELLGAPTLAAIAARALLPRWLAALAAWLNTQPQHRAVLNSYTQFKKMFSEDLLKEPGVRDAFRKALDMMNRSADIDSVEPPPPPRFTIPVEKKETSKIADVLASVTQQKSFSELLESRCIERGITFVPIAGKTREGRPLYKIGADMQCYVIRNVIMYSQDSGRTFEPVGLDRLLGLAEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -