Cros009240.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- sip1
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000012.1:3411109-3422390[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.8e-52 6e-48 164.8 0.9 8 230 370 574 363 582 0.95
Sequence Information
- Coding Sequence
- ATGTCGGACGACGAAGTAATACGTTTCGAGATAACTGATTATGATTTGGACAACGAGTTTAACCCAAACAGACGAGGGAGAGCCAAGAAAGAGCAACAAATTTATGGTGTATGGGCTAAGGACAGTGATGAAGATGACAATGAAGACAATGTGCGGCAGAGGACTCGTAAACAGAAGGACTATGCAGCACCCATTGGGTTTGTGGCAGGTGGGGTTCAGCAGGCAGGGAAGAAGAAAGAGCCCAAACAAGAATTGGAACCAGCTGAATCATCATCCCGGGTGACCATAGCAGACAGCTCTGATGAGGAGCCAACAACAGTCCCGGATGAGTCAGAGACGGCGGGCATCAGACGGCAAGGGCAAGGCATGCGGCCGGCTAACCTCGGAGGCAATTTGGGCAACTGGGAGAAACATACCAAGGGTATAGGAGCGAAGTTACTTTTACAGatgGGTTACCAACCAGGTAGAGGGTTGGGAAAAGACCTTCAAGGTATATCAGCACCGGTCGAGGCGACTATTAGGAAAGGGAGGGGTGCTATAGGCGCCTATGGTCCCGAAAAGGCAGCGATAAAAGCGAAAAAGGAGGAGGAGAGGCGTCTGAAAGAGAAACAAGATGAAGAGAAAGGGCCAGAAAAGTCTTACCACTGGAAGAAATCGCACAAGGGTCGCTACTTCTACCGCGACTCCGCCGACGTCATACAAGAGGGTAAACCTTCCATGCACTCTATCACCAGTTCGGAGTTGTCTCGCGTGCCGGTGATCGACATGACTGGCAAAGAGAAGCGCGTGCTGAGCGGCTACCACGCGCTGCgggccgccgcgccgcgcttCGAGCACGAGCCGCGGCGACGCTGCACCAACTTTGAAGCCCCTCAACTGTTGCACAATTTGGAGGTCATGGTCGAATGCTGCGAACAGGACATAATCCAAAACGCCCGCGAACTCCAACACGCAGAAGACGAGATTGTAGTGTTGGAACGAGACATCCGCGAATGCGACGACAAGCTCGCCGAGCAAGAGGTCGTGATAGACAAAGTGAGGGACATCAAAGCGCGGGTCGCTCGGCTGAGCCAGCCGGAGATCTCGTTGGAAGCTGCGTATGAGGTCGTGGCGGACTTGAAGGACGCCCACCCTCAAGAATACGAGATGTTCGGCATCGGCGCGATCGCCGGCAACATAGTGAGTCCCCTGTTCAGCGCCATGATGGCGGCGTGGGAGCCCCTGGCGGCGCCCGCGGAGCCCGTGCCCGCGTTCCTGAAGTGGCGGCCGCTGCTCACAGAAGAGTCCTACAACAGTCTGCTGTGGCAGCATGTCGCGCCCAAACTGAAGGCTGCTGCTGCAGTGTGGAACCCTCGTATCCCAGAGCCGATGCTGGCCGTGGTGTCGGCGTGGGCGGCGGCCTGGCCGGGCTGGCTGGCGGCCGCGCTGCTCGCCAACGTCGTGGGGCCCCGGCTGCTGGACGCCGTGCGCGGGTGGGACCCCACCGGGGACACGCAGCCGCTGCACCACTGGGTGCTGCCCTGGCACCCGCTGGCAGGCGAAGCCCTATCAACGTCAGTGTACCCTTTGATCCGGTCGCGGCTGGCGGCGGCGCTGTCGGCGTGGCACCCGGCGGACGGCTCGGCGCGGCCGCTGCTGGGCGCGTGGCGCGGCGCGTGGGGCGCCGCCCTGCCCGCCATGCTGCACCAGCACATCGTGCCCAAGCTGGAGCACTGTCTGCAGACCGCGCCCGTGCACCTCGTGGGCAGGGAGAACAGTGAGTGGTGA
- Protein Sequence
- MSDDEVIRFEITDYDLDNEFNPNRRGRAKKEQQIYGVWAKDSDEDDNEDNVRQRTRKQKDYAAPIGFVAGGVQQAGKKKEPKQELEPAESSSRVTIADSSDEEPTTVPDESETAGIRRQGQGMRPANLGGNLGNWEKHTKGIGAKLLLQMGYQPGRGLGKDLQGISAPVEATIRKGRGAIGAYGPEKAAIKAKKEEERRLKEKQDEEKGPEKSYHWKKSHKGRYFYRDSADVIQEGKPSMHSITSSELSRVPVIDMTGKEKRVLSGYHALRAAAPRFEHEPRRRCTNFEAPQLLHNLEVMVECCEQDIIQNARELQHAEDEIVVLERDIRECDDKLAEQEVVIDKVRDIKARVARLSQPEISLEAAYEVVADLKDAHPQEYEMFGIGAIAGNIVSPLFSAMMAAWEPLAAPAEPVPAFLKWRPLLTEESYNSLLWQHVAPKLKAAAAVWNPRIPEPMLAVVSAWAAAWPGWLAAALLANVVGPRLLDAVRGWDPTGDTQPLHHWVLPWHPLAGEALSTSVYPLIRSRLAAALSAWHPADGSARPLLGAWRGAWGAALPAMLHQHIVPKLEHCLQTAPVHLVGRENSEW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871306;
- 90% Identity
- -
- 80% Identity
- -