Cros000929.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- jarid2b
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000004.1:2733056-2751371[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-18 1.9e-14 54.8 0.0 6 88 334 413 330 414 0.92
Sequence Information
- Coding Sequence
- ATGGCAATTGCCGTGGCAACACTGAATTTGAACTGGCCTAGAGCATGCTATCAAAAGGCATGTGTATCGCAAACGGACTCTGATATAGAAGCGCCCGCCGCGACCCCGCAAGCCGTCGACCCGGAGTCCTGCCCGTCCAACCGCTACAACTCGGTCCAAGACGTCGTGGTGGCATCCAACGCCAAATGCCAGTTCCTGGCGGCGCGCTGTCGGAACTGTCGCGGCTGCGGCATCGTCGACAAAATCATACAGCTCACGCGGCTGATGCAGCCAGCGTACTATACAGCAGGCGACGTGTATGACTTCAACGCGGAACTGGCCGAGGCGATCAGTCCGTCCCTGTCCTGCCTTCGGAACCAGAGCAGGCAGGCGCGAGCGCTCGAAGAAGAAAGCCACTTGTTCATGGATCTGTTGCCTCAGAACAGCCAGCATATCATTCAGataacacTAAAACGCACAGCAGAAAGCCAGTGCATATCAAAGGCCTGCATAGTCAACCGGGACGTGATGGCCAACACGCCTCAGCCCAGTCTGATCGAGCACGAGAACCTGCTCGACAGGCTGTTGGAATGCCTCTCGGCGGCCTCCCAGAGCCAGCACGAGAGGGAGGAGGCCCAGCCCTCCACCAGTAAGAGCTTCGGGCCCGCCGGGCCGCCGGACGTCATCCGGCCGGCTTTGCGGGCCTGCACCGTCAATCTGGGGAAGCAGTTCCCGGAAACGCCCGATTCAAATTCCGATTTCGACGACTCGCGGGAGGCAACGACCGATACCCGGCAAGTACTCGACGCGCCCGTCTTCTATCCCACTGAGGAGGAATTCACGGACCCGATAGGATATTACGAGAAAATCGCCCCGACGGCGTCCAAATTCGGCCTCTGCAAGATAGTCGCGCCGGCCGGCTTCGCCCCGCCGTGCGTCATGAACGAGCAGTTCCGATTCGCCGTCATATACCAGTACATATCGAAGCTGTACTCGCGATGGGGGCCCGCGTCGCGCGAGCTCGCGGCCATCAAGGCACATATGAAGACGCAGAGCGTCGTGTTCCCTCGCTCGCCACTGTTGGACGGCAGCGAGGTGAACCTCCCGAAGCTCCACCACTCCGTGCAGCGCAACGGCGGCCCCACCAACGTGATCCAGCGCAAGCGCTGGGGCCGCGTCGCCGAGGAGATGAAGCTGACCAAGCTGCAGAACCCGGAGAGGAAACTGGACCAGCTGTTCATGCGGTACCTGCTTCCGTACACCATGCTGTCCAACCAGGAGCGTCAAAAGAAAATGGCCGAAGTCGAGAAATGCTGGACGGTGAAATACCAAAAGATGCTGGAGCGGGCGCGCAACCCGTTCCACAGGCAGAAGCGGATGCTCGGCGAGTCGGAGTCTTCAGAGGACGAGGTGGAAGACAACGACACGGCCGGGGCCCTGGACGAGGCCGAAGACTGCATCGTCCAGGGACGCATCATGAACCTCGCCACATTCAAGAAGATCGCAACGTCCCTGATGGAGGCCCATTTCGAGGCGGGcacggcgccggcggcggcggccgtcGAGGCGGCGTACTGGCGGGCGGTGTTGCACGGCACGGAGCACATCGTCGCCAACACGGCGTCCATAGACACCGGCGAGGAGGGGTACGGCTTCCCGAAGGACTCTGCCGTCAGCTATGGCGGCCACCCGTGGAATTTGAAGAGACTGAGTCAGAACCCGGGCAACGTGCTCCGCTTCCTCGGCCCAGTGTTGGGCGTGACCGTGCCCACGCTGCACCTCGGGATGCTCTTCAGCACGTCCTGCTGGCACCGGGACCCTCACGGCTTACCCTGGACCGAGTTCATGCACAGCGGGCCTGAGAAGATCTGGTACGGCATCCCGAGCGGGCAGAGCGCGAATTTCCGTCGCGCAGTCGAGACGCTCTGCCCAGCGTATTGCCAAAGCAAGTCCATATGGCTGGCGTCAGACATCGCCATGATACCGCCGGATATCCTCGCCGAGCACAACGTGACGCTCTCGCGCGCCACGCAGAAGCCCGGCGAGTACATAATGGTGTTCCCCGAGGCCCATTCCTGCTCGATCACGACGGGGTTCGCGATATCGGAAAGCGTGTACTTCGCGTCCAGCTCTTGGTTGGATAATGTATACCAGCTGTTCCAAGAGCTGCGCAACAGCTGCGAGCCGACCATGTTCTCGCTGGAACAGCTGCTCATGAGCGGCGGCGGCGAccgcgcggcgccgcgccgcgtgCTGCCCGCCGTGCTGGCCACGCTCGTGGGTGAGGAGCTGGCGCACCGCCGCACTCTGGAGCGCAGGGGGCTGCAGTTGGTGGTTCAAATCAGCGAGCCCGACGAGGAGTCCCAGTCCCAGGCGTGGACGGCGCGGAACCAGGACGAATGCGAGTTCTGCCGCTCGACGCTCTACTTCTCCAAGGTAATCGGCTTGACGGGCAAGAAGTCCCTAGTGTGCCCCGAGCACGCGCTCCGTTTACTGGACACGCAGAAGTATCGGGAGGTGAACGTGAAGAGTCTCGGCTTCGTCACGCGCTACTCCTCCAAGATGCTCCAGGAACTATGGGACAGGCTCGAATGCCACGGCAAAGACGAGAACGCACCGGCCAACAAGTAG
- Protein Sequence
- MAIAVATLNLNWPRACYQKACVSQTDSDIEAPAATPQAVDPESCPSNRYNSVQDVVVASNAKCQFLAARCRNCRGCGIVDKIIQLTRLMQPAYYTAGDVYDFNAELAEAISPSLSCLRNQSRQARALEEESHLFMDLLPQNSQHIIQITLKRTAESQCISKACIVNRDVMANTPQPSLIEHENLLDRLLECLSAASQSQHEREEAQPSTSKSFGPAGPPDVIRPALRACTVNLGKQFPETPDSNSDFDDSREATTDTRQVLDAPVFYPTEEEFTDPIGYYEKIAPTASKFGLCKIVAPAGFAPPCVMNEQFRFAVIYQYISKLYSRWGPASRELAAIKAHMKTQSVVFPRSPLLDGSEVNLPKLHHSVQRNGGPTNVIQRKRWGRVAEEMKLTKLQNPERKLDQLFMRYLLPYTMLSNQERQKKMAEVEKCWTVKYQKMLERARNPFHRQKRMLGESESSEDEVEDNDTAGALDEAEDCIVQGRIMNLATFKKIATSLMEAHFEAGTAPAAAAVEAAYWRAVLHGTEHIVANTASIDTGEEGYGFPKDSAVSYGGHPWNLKRLSQNPGNVLRFLGPVLGVTVPTLHLGMLFSTSCWHRDPHGLPWTEFMHSGPEKIWYGIPSGQSANFRRAVETLCPAYCQSKSIWLASDIAMIPPDILAEHNVTLSRATQKPGEYIMVFPEAHSCSITTGFAISESVYFASSSWLDNVYQLFQELRNSCEPTMFSLEQLLMSGGGDRAAPRRVLPAVLATLVGEELAHRRTLERRGLQLVVQISEPDEESQSQAWTARNQDECEFCRSTLYFSKVIGLTGKKSLVCPEHALRLLDTQKYREVNVKSLGFVTRYSSKMLQELWDRLECHGKDENAPANK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00342000;
- 90% Identity
- -
- 80% Identity
- -