Ctib016605.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- L
- Assembly
- GCA_963669355.1
- Location
- OY770263.1:10018469-10034720[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9e-06 0.001 20.8 1.7 1 23 196 218 196 218 0.98 2 18 0.72 81 5.4 5.7 1 23 224 246 224 246 0.98 3 18 3.9e-07 4.4e-05 25.1 3.1 1 23 252 274 252 274 0.99 4 18 3.2e-05 0.0037 19.0 0.2 1 23 280 302 280 302 0.98 5 18 0.98 1.1e+02 4.9 0.2 3 23 360 382 358 382 0.86 6 18 0.0072 0.82 11.6 1.9 2 23 403 425 402 425 0.96 7 18 0.11 12 8.0 0.5 1 23 522 544 522 544 0.95 8 18 0.17 19 7.3 0.9 2 23 553 574 552 574 0.95 9 18 0.00081 0.091 14.6 2.5 1 23 582 606 582 606 0.91 10 18 10 1.1e+03 1.8 0.1 1 19 611 629 611 631 0.82 11 18 0.13 15 7.7 1.0 1 23 641 664 641 664 0.96 12 18 0.0023 0.26 13.2 2.9 1 23 698 720 698 721 0.96 13 18 0.00066 0.075 14.9 4.7 2 23 902 924 901 924 0.96 14 18 0.2 22 7.1 0.1 1 23 930 952 930 952 0.92 15 18 1.1 1.3e+02 4.8 0.3 2 23 960 981 959 981 0.93 16 18 4.7 5.2e+02 2.8 0.5 2 23 1067 1088 1067 1088 0.93 17 18 0.0028 0.31 13.0 0.0 1 23 1098 1120 1098 1120 0.97 18 18 0.22 25 7.0 0.3 1 23 1127 1149 1127 1149 0.96
Sequence Information
- Coding Sequence
- ATGGCGTCATCTCATCCACGACATATCCGCTGGCCATCATGTAACTTCCTCGATTCGGACTTATCATTGACTCGACCATCACTTAGCTTCCTTGGGCAAACACTTTGCACCGGTTCTCGTGGTTTTGCTTTAATTAATTCCATCATTGGATTGACCGGAGATGATTTATATTCAACCCATACATCGTCAAGCTACTCACCCTCGACTTCGGAAGGAGCCGTAACGCCAAACTCTTTACTACACCATCATCAGCAAGACGGAGATGTTAATCGCCTTAGAGCAAgtcatcatcatcgtcgtcgGCGTACCACATCGGCAGCAAATGGTTCTTTGGATGGGCACGAGGATAACGACGAGGACGACGCTGATTCCCACGATGAAGGAGTTATTGCATCGCGTCACAATACTACTGGCGCTGCTGACGAGGACGACACCAACGAACACCGGCATCCCGGTATTATGGGTGACGGTGGcagtggtggtggtggtggaaaAATCCCGGCAAAATTACGTAAAATCGAAAGGGATGCTTTCAAATTGGAAAAGATGACAAGCGACGGCATTAAAACCACCTCGGATGGATCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCACGTCTTGGATATCTGAAGAAACATGAACAGAGTCATGCCGAACATCTTCcgttcaaatgcgagtattgcGCTCGTCTCTTCAAACACAAGCGTTCCCGAGATCGTCACACAAAACTGCATACCGGTGACCGTCGGTATCGATGCCCGCACTGTGAAGCAGCCTTTTCCCGAAGCGATCACCTCAAGATTCACATGAAAACGCACGACAACCAGAAGCCATTCCAATGCACGGTTTGCAATCGGGGATACAACACGGCTGCAGCGCTTACTTCGCACATGCAGAATCATAAGAAGCAGGCTGCACTTTTAGGAACGGGCCAAGCCTTGAATTTTAGCCCGCGATCAACAGGATCGGGATCGAGTAATGGAAGCTTCCACAAACGTCGCTACGCAATGGCCGATTGCAGTCCAAGTCGCATCGACTATCGGAAACATAACCGCATTGCCTCCTTCATACCGTGCATGTACTGCACCAAATCGGACTTCACTTCACTCGAACAGCTCAATTCACACATTCAGGCAATGCATGAACACGCCACGGCAAAAGAAAGCCAACCCGGAAATCCTAGTAATCCTGTATTTCAATTGTCCTGCGAGTACTGCACTATGAAATTTCCCAATATACCGACGATGTTCCATCATATGCGAACCACGCATATCGATCGATTGGCAAGCCCGAACTCCTACTTCGAGCACTTCAATCGGCTCGCAGCGTCGGGAACCTTCAGTCCGCGCCTATTGACCCCCGGAAATACAGCATCGCGCTACGATGAAACGAAGGTGAAGGTGGAACAGCCGAGTCCAGGTCAGGATCGTCGCAGTCAAGCTGGCTCTGAAAAGGACGACGAACAAGTCAGTCCAACCGACCTGAGCCAACCAAAGAAGCGACTGCATAGTCCTTCCGTGCAAGACCCTGCTGCTAGCGATGACAAGGGACCCGGCGCGTTCCTATGTAACCAATGTAATGCCGGTTTACCGGACTTCGACACGTTCCGATCGCATCTGAAGACGCACATAGCTCAAGGAGTGGCCAGCTTGGTGTGCCACCATTGTGGATTGGCGCTACGTGATCCTGCCGAGCATGAACGCCACGTCATCTCGCACTTTCTTATCACGAGCTCCGAATTCTCATGCACGAACAGCTGCAAAAAGTCATTCACGAAATCCGACGACCTGCAGAAACATTTGTTCGAGAGTCACATCCAGATCATGTACAAGTGCTCGATTTGCTCGGATCTGTTCGATACGAAAGTTGCAATTCAGGTGCATTTTGCATGCACGCACTCGAACGAAAATAAGCTGTTCCGATGTTCCGCCTGCATGGAATCATTTCGAACAGAGAAGGATTTTTCGAACCATGTTCGCGCTCGACATTCGACCAACGGCTCGTCCTCGATACAGTGTATGTTTTGCCGTGCGATTTGCTCGTCCGAGCTCGAAATGCATTTTCATCTGGCTGCACATGCCCGTCAGTTCCGATGCCCTTCGTGTCCGGAAACATTTCATGTGGAATTCCTTCTCGATCGGCACATGCAAACGCATCATTCGCAGAAGGACGCGGCCAATGCTGCTAGCTCTGCCGCTGCAGCAGGAGCAGTAGCCACCAATCCGAGTGCATATCATGCCGCTTTCACCAAGCAGCCTTCCGTtcagaacaacaacaacaacattctGGATTACAATGCTTTTTCGGGTGGGAAGACTCTATTCCAGATGCCAGGCAGTAAGTTCTACAATCCGTTACAAGTCGATACGAATGCAGTGAGCGGACTTGGAAAGCACTCAGCTCTGATGTACGGACTGGGTCAACGCTATTTCGATGCCAATAAAACCTTGATCGATATGTACAATTACAATCAGGAGAACAAGACCACCCCCGCGTATTTCCTTAATCCCGGCAATTTCGAAACTGGCCGTGCTGCGTTGAAAAGTCGCCACCACCAGCAAGACGACAAATCGAACGCGGAACGATCTGGTGCGAGCGGCTTTAGCTGCGGAATATGCGAACGATCCGATTTTCGAACCGAAAACGAAGTACATTCGCATCGGAAAATCGTTCATAACTTGAAAACCGGTGTGAGTCTTCGCTGCGCCTATTGCAATGGAAATTTCAAGTCGCGCAGTGAACTCGAACATCACATGAAAACGTGCCACAATTCGACCGGCAAACATAAATGCCTGATTTGTGATGAGATATTCCCGTCGCCGGCTATTCTTGCCGAGCATAAGTTGCAGCACTCGAAGGTTGGCCAATCGGGAAAGTGTTCGCACTGTTCGATGGCGCTGAACGATGTCGCGGCCTTTAAACAGCATCTCGGTGAGCACAATGCCGAAGGACAAATGCCGGTACAATGCATTTGTTGTCGACAAACTCTTAACTCGGACTTTGAAGTCGGTCTTCATGCCAAATTCCACACAAAATCCACAAACAGTCCGGAAAATCTATGCGCGCTGTGTCTCGAAACGCTCCCATCGACCTCCGAATCACGCGTCTGTGACAAATGTTGCCGCAAGCATAATCTAACGGCTAAATTCAATATGCGTTTTGACAGTAACGGTGCTCGCAACTACGTCCAGAACCGTTGTAATCTTTGCAAAATGATTCTTCCGCATGCCCAGCGTCTGCAAGAACATCTGGTCGAACACACGTTTATCGGTTGCGAAGAACGCGGCTACTCCTGCTACATTTGTTCGGCCGTCTTTACAGTTCCGGCCGGTCTACTCAGTCACATGCTTGAGCATGGCCTGAACGCTCGTCCTTACGATTGTAATCTGTGCAgcgaaaagtatttcttccGAGCCGAACTGGACAATCATCTGATTGAGCACGAACAAAACGGTGTCGGCACGATGAACGGCAGTGCGACTGGAGTAACAGTTAAAAATGAACAACTCGCGGAACCACAAAAGGATACCGAACCTGCCGTCATCGCTGAGGCAGCGGCCGCATCAGCTGAACAGGAACCTCCAATTGTCCAGCAGGTCAAAGCCGAAGCTGTCGATGATATTGAGGTCGCTGAAAACGAAGACGATGACGAAGAGTATATTGAGGTGGAGAAGGTTCCAGACACGGCCGGTTCGACCCGTAACGCTCAAGAAAAGGacaattaa
- Protein Sequence
- MASSHPRHIRWPSCNFLDSDLSLTRPSLSFLGQTLCTGSRGFALINSIIGLTGDDLYSTHTSSSYSPSTSEGAVTPNSLLHHHQQDGDVNRLRASHHHRRRRTTSAANGSLDGHEDNDEDDADSHDEGVIASRHNTTGAADEDDTNEHRHPGIMGDGGSGGGGGKIPAKLRKIERDAFKLEKMTSDGIKTTSDGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKQAALLGTGQALNFSPRSTGSGSSNGSFHKRRYAMADCSPSRIDYRKHNRIASFIPCMYCTKSDFTSLEQLNSHIQAMHEHATAKESQPGNPSNPVFQLSCEYCTMKFPNIPTMFHHMRTTHIDRLASPNSYFEHFNRLAASGTFSPRLLTPGNTASRYDETKVKVEQPSPGQDRRSQAGSEKDDEQVSPTDLSQPKKRLHSPSVQDPAASDDKGPGAFLCNQCNAGLPDFDTFRSHLKTHIAQGVASLVCHHCGLALRDPAEHERHVISHFLITSSEFSCTNSCKKSFTKSDDLQKHLFESHIQIMYKCSICSDLFDTKVAIQVHFACTHSNENKLFRCSACMESFRTEKDFSNHVRARHSTNGSSSIQCMFCRAICSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHSQKDAANAASSAAAAGAVATNPSAYHAAFTKQPSVQNNNNNILDYNAFSGGKTLFQMPGSKFYNPLQVDTNAVSGLGKHSALMYGLGQRYFDANKTLIDMYNYNQENKTTPAYFLNPGNFETGRAALKSRHHQQDDKSNAERSGASGFSCGICERSDFRTENEVHSHRKIVHNLKTGVSLRCAYCNGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCSMALNDVAAFKQHLGEHNAEGQMPVQCICCRQTLNSDFEVGLHAKFHTKSTNSPENLCALCLETLPSTSESRVCDKCCRKHNLTAKFNMRFDSNGARNYVQNRCNLCKMILPHAQRLQEHLVEHTFIGCEERGYSCYICSAVFTVPAGLLSHMLEHGLNARPYDCNLCSEKYFFRAELDNHLIEHEQNGVGTMNGSATGVTVKNEQLAEPQKDTEPAVIAEAAAASAEQEPPIVQQVKAEAVDDIEVAENEDDDEEYIEVEKVPDTAGSTRNAQEKDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202996; iTF_00203884;
- 90% Identity
- -
- 80% Identity
- -