Basic Information

Insect: Choreutis nemorana
Gene Symbol: -
Assembly: GCA_949316135.1
Location: OX438625.1:4968873-4970000[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.02 2.3e+02 2.4 0.0 25 49 9 33 6 36 0.90

2 11 0.32 3.8e+03 -1.5 0.0 27 45 40 58 39 64 0.78

3 11 0.00072 8.5 7.0 0.0 20 45 61 86 48 94 0.84

4 11 0.069 8.2e+02 0.6 0.0 21 53 89 121 86 122 0.83

5 11 0.00051 6 7.5 0.1 21 48 117 144 109 149 0.92

6 11 0.015 1.8e+02 2.7 0.0 21 52 174 205 169 207 0.86

7 11 0.017 2e+02 2.6 0.0 21 46 230 255 224 261 0.80

8 11 0.0021 25 5.5 0.1 21 46 258 283 250 287 0.89

9 11 0.5 5.9e+03 -2.1 0.0 26 37 291 299 290 316 0.61

10 11 0.1 1.2e+03 0.1 0.0 23 45 313 335 305 342 0.83

11 11 3.6e-05 0.43 11.1 0.4 21 44 339 362 331 368 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.02	2.3e+02	2.4	0.0	25	49	9	33	6	36	0.90
2	11	0.32	3.8e+03	-1.5	0.0	27	45	40	58	39	64	0.78
3	11	0.00072	8.5	7.0	0.0	20	45	61	86	48	94	0.84
4	11	0.069	8.2e+02	0.6	0.0	21	53	89	121	86	122	0.83
5	11	0.00051	6	7.5	0.1	21	48	117	144	109	149	0.92
6	11	0.015	1.8e+02	2.7	0.0	21	52	174	205	169	207	0.86
7	11	0.017	2e+02	2.6	0.0	21	46	230	255	224	261	0.80
8	11	0.0021	25	5.5	0.1	21	46	258	283	250	287	0.89
9	11	0.5	5.9e+03	-2.1	0.0	26	37	291	299	290	316	0.61
10	11	0.1	1.2e+03	0.1	0.0	23	45	313	335	305	342	0.83
11	11	3.6e-05	0.43	11.1	0.4	21	44	339	362	331	368	0.88

Sequence Information

Coding Sequence: ATGATGATACACGACGGTGATAAACATACTTGTTATATATGTAACACCAAGTGTTTAACATCAAATCTATTGACCAAACATATAGCTGTTGAGCATATAGTAGACGGGAGGTACCCCTGCACTATCTGCACTGAGATACGAGACAAACCCAACCAGTTGAAAGCGCATTTAAAATCCCACAAAAGCAAAGAGACATTCAAATGCGAGGTCTGCACCAAAGAGTTCCGAAGAAGCAACAACTTGAAGGAGCATATGAAAACTCATAGCGATAAGAAGTTTATATGCAACTACTGTAGTAAAGCGTTCACTCACAAGAATAACTTGACGATCCATTTGAGGATACATACCGGAGAAAAACCACATGTTTGTGATGTATGTGGCAGAAGTTTCCTCCAAGGAAGCTCGTTTAAAAAACACATGCATGTTAGACATTCCGGTTTAAAACCGTTCGAATGCGAAGACTGCGGCAAAAAGTTCTCGACGCACATCTATTTAGTGACCCATAAGAGACTTCACACTGGAGAGAAACCTTACTCCTGCAAGGTgtgtaaaaaaagttttgcagCGTTGGGAAATTTAAAGACCCATAGCCGCTTGCATTCAGGGAATAAGCCTTATAAATGCAGCTTCTGCGATAAACGCTTCGCGTACGCGTCGAGTTACAAACTGCATGAGCGAATCCACACTGGGGAAAAACCATATGCATGTAACATATGCCAGAAAACCTTCTCAGATAATGGCTACTTGAAAGTACATATGAGGGTTCACACTGGAGAGAAGCCATATCCATGTGAAATATGCCAAAAGAATTTCAGAGAGGTGGGGCAGTTAAAAAAGCATATGCGAGTCCATACTGGCGCGATATTGCATACATGCAAAATATGCAATAAGCAAGTAGGGAGTTTGTACAATCATATGAAAGTGCATAGCGATGTTAAGCCGTTTAGCTGTGAATTATGCGGGAAACGATTTACTGTTAGCTTCAATTTGAAGCTGCATATGCGCACGCATACTGGGGAAAAACCATATGCATGCGAAATATGCAACAGTCAGTTCAGCCAAAGCAGCGCATTGAAACGGCATAGAAGAATTCATGTTgagaaaacagaaataaatgaaaatcattGA
Protein Sequence: MMIHDGDKHTCYICNTKCLTSNLLTKHIAVEHIVDGRYPCTICTEIRDKPNQLKAHLKSHKSKETFKCEVCTKEFRRSNNLKEHMKTHSDKKFICNYCSKAFTHKNNLTIHLRIHTGEKPHVCDVCGRSFLQGSSFKKHMHVRHSGLKPFECEDCGKKFSTHIYLVTHKRLHTGEKPYSCKVCKKSFAALGNLKTHSRLHSGNKPYKCSFCDKRFAYASSYKLHERIHTGEKPYACNICQKTFSDNGYLKVHMRVHTGEKPYPCEICQKNFREVGQLKKHMRVHTGAILHTCKICNKQVGSLYNHMKVHSDVKPFSCELCGKRFTVSFNLKLHMRTHTGEKPYACEICNSQFSQSSALKRHRRIHVEKTEINENH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00323674;
90% Identity: iTF_00323674;
80% Identity: iTF_00323674;