Cnem021192.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438625.1:4957672-4958802[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.015 1.8e+02 2.8 0.0 26 49 10 33 3 36 0.88 2 10 0.14 1.7e+03 -0.4 0.0 27 45 40 58 38 63 0.87 3 10 0.0019 22 5.7 0.0 26 45 67 86 49 91 0.86 4 10 5e-05 0.6 10.7 0.1 21 48 118 145 101 151 0.89 5 10 0.05 5.9e+02 1.1 0.1 21 32 175 186 169 206 0.74 6 10 0.26 3.1e+03 -1.2 0.0 12 31 193 213 185 229 0.76 7 10 0.0073 87 3.7 0.0 21 51 231 261 223 262 0.83 8 10 0.00047 5.6 7.6 0.0 21 52 259 290 248 291 0.88 9 10 0.004 48 4.6 0.0 23 52 289 315 286 317 0.81 10 10 1.8e-05 0.21 12.1 0.5 21 52 340 370 332 372 0.84
Sequence Information
- Coding Sequence
- ATGAAGATACATAGCGGCGATAAATACGCCTGTTACATATGTAATACTAAATTTCTGAGTACAAAGCTACTGACGAAACACATAGAAGTTGAGCATATAGTAGACGGGAGGTATCCTTGCACTATCTGCACTGAGGTTCGAGACAAACCCAACCAGTTGAAGGCACATTTAAAATCCCACAAAAGAAAAGAGACATTCAAATGCGAGGTCTGCACCAAAGAGTTCCGAAGGAGCAACAACTTGAAGGAGCATATGAAAACTCATAGTGGGCATAGACAATTTGTCTGCAGCTTTTGCACGAAAGCGTTCACCCATAAACATTCCTTGACCACTCATATAAGAATACATACCGGGGAAAAACCGCACGTCTGCGATATCTGTGGCAGGGGATTCCATCAGGGGACGCATCTGAAAAGGCATATCCACATTATGCACTCGGGTCTCAAACCCTACGAATGTAAAGTTTGCCAGAAGAAATTTTCAACGAAAAACTATTTGATAATACACGAAAGACAGCATTCTGGTGAAAAGCCGTTTTCTTGTGATATTTGTAAGAAGAATTTCGCTGCTTACAGCACATTAAAAGTCCACAGCCGCATGCATTCCGGCGACAAGCCTTACAAATGCAGCTTCTGTGATAGGAGATTCGCTCAGATAGCTAGCTTTAAGCTGCACGAACGGACGCACACCGGGGAAAAGCCATTCGCATGTAAAATATGCAAGAAAACCTTCTCAGATAATGGCTACTTGAAAATACACATGAGATTACACACAGGCGAGAAACCTTATCCATGTGAGATATGCAAAAAGAGCTTCAGGGAAACGGGGCAGTTGAAAAAGCATATGCGAGTGCATACTGGCATAAAGCCGTACACATGCAAAATATGCAACAAACAGATTGGGAATCTGAATAAACACATGAAAGTGCATAGCGACGTGAAGCCGTACAGTTGTGACTTGTGCAGTAAACAGTTTGCGGTGAACTTCAATTTGAAGCTGCATATGCGCACGCATACTGGAGAAAAGCCGTATGCATGCGAAATATGCAACAGTCAGTTCAGCCAGAGCAGCGCGTTGAAACGGCATAGATGTATACATGTCGGGAAACCAGAAATAACAGAAATGcattga
- Protein Sequence
- MKIHSGDKYACYICNTKFLSTKLLTKHIEVEHIVDGRYPCTICTEVRDKPNQLKAHLKSHKRKETFKCEVCTKEFRRSNNLKEHMKTHSGHRQFVCSFCTKAFTHKHSLTTHIRIHTGEKPHVCDICGRGFHQGTHLKRHIHIMHSGLKPYECKVCQKKFSTKNYLIIHERQHSGEKPFSCDICKKNFAAYSTLKVHSRMHSGDKPYKCSFCDRRFAQIASFKLHERTHTGEKPFACKICKKTFSDNGYLKIHMRLHTGEKPYPCEICKKSFRETGQLKKHMRVHTGIKPYTCKICNKQIGNLNKHMKVHSDVKPYSCDLCSKQFAVNFNLKLHMRTHTGEKPYACEICNSQFSQSSALKRHRCIHVGKPEITEMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00323675;
- 90% Identity
- iTF_00323675;
- 80% Identity
- iTF_00323675;