Cnem014346.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Choreutis nemorana
Gene Symbol
-
Assembly
GCA_949316135.1
Location
OX438613.1:4688869-4698642[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9e-05 0.0067 17.2 0.1 3 23 130 150 129 150 0.97
2 18 8.2e-07 6.1e-05 23.6 1.2 1 23 156 178 156 178 0.99
3 18 5.1e-06 0.00038 21.1 2.7 1 23 184 206 184 206 0.99
4 18 3.3e-06 0.00025 21.7 2.6 1 23 221 243 221 243 0.98
5 18 4.6e-05 0.0034 18.1 0.6 1 23 258 280 258 280 0.98
6 18 4.6e-05 0.0035 18.1 3.1 1 23 295 317 295 317 0.98
7 18 3.2e-07 2.4e-05 24.9 1.5 1 23 332 354 332 354 0.99
8 18 0.00014 0.011 16.6 2.8 1 23 360 382 360 382 0.98
9 18 1e-05 0.00075 20.2 2.1 1 23 388 410 388 410 0.99
10 18 0.033 2.4 9.1 1.8 1 23 417 439 417 439 0.98
11 18 5.5e-07 4.1e-05 24.2 2.3 1 23 445 467 445 467 0.99
12 18 0.038 2.8 9.0 1.8 1 23 474 496 474 496 0.98
13 18 2.2e-06 0.00017 22.3 1.5 1 23 502 524 502 524 0.99
14 18 0.00042 0.032 15.1 0.7 1 23 531 553 531 553 0.99
15 18 2.5e-06 0.00018 22.1 1.9 1 23 559 581 559 581 0.98
16 18 0.0018 0.13 13.1 0.3 1 20 587 606 587 609 0.93
17 18 3.5e-05 0.0026 18.5 1.4 2 23 616 637 615 637 0.96
18 18 2.7e-06 0.0002 22.0 1.3 1 23 643 666 643 666 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAACAGATCAAGGCTGAGCCTATGAGCTTCTACACGTCACACGCCCATATGGCTCATTCCGGCCCCCCGACGATAGTCCGGTCTGAGTCTAACCACGCCATCATCAGCATGAACCAGCATCACCCGCAGGAAGACTCCAAGGACAGCCTTATACACCAGCAAGTACACCAACAAGACCTCCTCGACCATCAGCAGCAGGAGATGCACCAACAACAGGATGATGAGcTTAGCTTTAAAGGGATGGATGATGAAGGTGTTGATATGGATATGGATGGACGGCAATGTTCACAAGGTATGGGAGTTGACATGGGCTCGGTACAAGCCAAAATGGAAGTATCAAATGGTGGTCAATCAACACCAAGATCAAAACCGCAAGCTTGTAAGGTTTGCGGTAAAGTCCTGTCTTCTGCTTCTTCTTATTACGTCCATATGAAGCTACACTCTGGAAATAAACCATTCCAGTGTACGGTATGCGACGCGGCGTTTTGTCGCAAGCCATACTTGGAGGTGCATATGCGCACTCACACTGGCGAGAGGCCGTTCCAGTGCGACCTCTGCCTCAAGAGATTCACACAGAAATCCAGTCTCAACACGCACAAACGCGTCCATACCGATGAGCACATGCGCGCGTTAATGGTGAAGGACCGGCCTTACAAATGCGAACTGTGCCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACAGACACAAGAAAATTCACACGGAGGAACACAGACGCGCGTTGCTGGCTAAAGAACGGCCCTACCAGTGCGGCATCTGCTATGTCCGATTCACCCAGAAATCGAGTTTGGGCCGGCACAGGATAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGAAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGTCCCTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCAAGCCTGGGCACTCATAAACGTATACACACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACACAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGGCGAGCGGCCCTATCAGTGCGACGCCTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGCGGACGCACACAGTCCAGGGCAGGCCGTTCCAGTGCCTCTCCTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACACGCGCACGCACACCGGCGAGCGACCCTACCAATGCGACATCTGTCTCAAGCGGTTCACGCAGAAGTCCAGTCTCAACATACACAAGCGGACGCACTCAGTCCAGGGCCGGCCGTTTCAGTGTCTGCAGTGTCCGGCCGCCTTCACCTGCAAGCAATACCTTGAGATCCATAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAATCCACATTAAACATTCACAAAAGAACGCACACAGTGCAAGGTCGTCCGTACCAGTGCATGGAGTGTCCGGCGGCGTTTACTTGCAAGCCGTACCTGGAGATACACATGCGCACGCACACGGGCGAGCGCCCCTTCGAGTGCGATGTCTGTTACAAACGGTTTACGCAGAAGTCCACTCTCAACATTCACAAGAGAATACACACCGgtGAACGTCCATATGCTTGTGATATTTGTCAAAAACGTTTCGCCGTGAAGAGTTACGTCACTGCGCACAGGTGGTCCCATGTTGCGGACAAGCCATTGAACTGCGACCGGTGTTCGATGACGTTCACATCCAAGTCTCAGTTTGCATTGCACATCCGCACCCACTCCGCCGGCTCGTGCTACGAATGCAGCGTATGCGGACGATCCTTTGTCAGGGATAGCTACCTCATACGCCACCACAACCGAGTCCACCGCGACAATCACAGCAACGTGTCTGCTAACAGTCTCGTGACCAACAACAGCGTCGCCAACAACTCTAATGGGAACTTCCACTCGCCGGCGGTCTGCGATCTAAGTTTCGTGCCGATGGTGAATCGCTACATGACGTCACAAGGTACGCAGGTCTCTATGCAGGACACCCAGAGCAAAATGTCCGCGATGTCGCCGCAATCCATCGCCTCGATATCatcgccgccgccgccgcacacGCCGACGCCGCAGCTGTCGGGGCAGATGCATCTGGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHAHMAHSGPPTIVRSESNHAIISMNQHHPQEDSKDSLIHQQVHQQDLLDHQQQEMHQQQDDELSFKGMDDEGVDMDMDGRQCSQGMGVDMGSVQAKMEVSNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGICYVRFTQKSSLGRHRIIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRSFVRDSYLIRHHNRVHRDNHSNVSANSLVTNNSVANNSNGNFHSPAVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQLSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_01076785;
80% Identity
-