Cnem004742.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949316135.1
- Location
- OX438599.1:9747424-9755419[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-75 2.8e-71 240.6 20.5 1 298 141 424 141 426 0.88 2 2 0.075 1.8e+03 -1.7 4.7 202 235 459 497 441 501 0.43
Sequence Information
- Coding Sequence
- ATGGGTAATAAGTATAAATCCGTGACGCCTGGAAGTAGTGATGAGGAGAGTGGTGAGGCGTTCACCGACGCCGACTTCGGCGACACTGATGATGACATGCTTGTAGAACACGATGATATCTCTTCAAATATTTCTAAACTTCCAGTTAACGACACGATCAACTTGGATCTTATGAAAGCAGTTTTAGAAGAGAATTTCGTAACAGAAGAGACTATTTTGAATAGTATCGATTTAGCGAATGATCCGGAACATAACGATCAGgttgataataatataaccGAATTCACAATGGTCAAGGGACTTATCAATGGTGACATGAATCATGTCAACGGTGAGAATGGAGTGTCAGAAATTCGTCGAGATTCTCACGGAGATCAGAACCCTTCAATAGTAGGGATTCTTGGAGACCAACACAATCATGCGGAACAGCGTCTAGCGGCGCGGCGAGCTGCTCGGGCGGAGGCGCGGGAGATTCGCATGAGGGAGCTGGAGAGACAGCAGAGGGAACAGGAACAACATGCCGACAAGGCGTATGACATGTATACAGAGACGGTCAGCCGCCGTGGTGGATCCCGCCTGGCCGCCCTGAGCCCTGGAGGGCTTCACTCGCCGCGAAGGAGCTCCGAAGACTCCGCCGATGAACCTTTCAGTGTCAAAGACTTGAGGCACGAACTAAAAGAGGTGGAGGAGAAGTTCCGGAAGGCGATGATATTGAACGCGCAGCTGGATAATGACAAGGCGTCGCTCGCGTACCAGCTGGAACTGCTCAAGGACAGGATAGAAGAACTGCAGGAAGACTACTCACAGTTACAGAGGGAACACAAGGAGAAGTGTTCAGTGCTGGAGCGACTGAAGCGCGAGCACGCGACGGTGGAGCGCGAGTTGTCTCTAGCGCGGGACGCCGTGCGGGCGCGGGACGCCGCCGCAGAGGACGCGGGGCTGGTGTTCGCGGAGGCGGGGGGCGCCGGCGGGGCGGGGGGCGCCGGCGGGGCGGGGGGCGGCATGCCGGCGCTCGCGCTGCTGTCGCGTGACACGGAGCGCCAGCTCGACGGGGAGGGCACGCTCGACGTCCGGTTGCAGAACCTGCTGAGCACGAAGCTATCCCTGGAGTCGGAGGTGCGCAAACTAAAGCTTCAGCTTAACGAGGAGCGCGCCGCCACGCACAACGGGCTCACCAACCACCACGACCAGGAATACGAGACAGAACTGGAGACAGCACGTAAGGCGGTAACGGAGGCGAAGGGTCGGGCTGCTCGTGCAGAGGCCGAGGCAGCACTACAAGCCGCCGCCCTCGCGCGGCTCGACGCTCAGCTCAGCCGACTGCGTGCCCAGCATCAGGCCAGCCAGGACAGCGAGCACCAGTTGCAGCAGGACCGCCGTCGTCTGCAGAGAGAGGCAAGGGAGGCGCTAAATCGAGTAGAGGAGCTAGAGACGGAAAACGGTCATTTAACGAAACGACTAGACAAACTGAAGAATGCAAAGTCAGCGCTACTCAAAGATCTGTGA
- Protein Sequence
- MGNKYKSVTPGSSDEESGEAFTDADFGDTDDDMLVEHDDISSNISKLPVNDTINLDLMKAVLEENFVTEETILNSIDLANDPEHNDQVDNNITEFTMVKGLINGDMNHVNGENGVSEIRRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEQHADKAYDMYTETVSRRGGSRLAALSPGGLHSPRRSSEDSADEPFSVKDLRHELKEVEEKFRKAMILNAQLDNDKASLAYQLELLKDRIEELQEDYSQLQREHKEKCSVLERLKREHATVERELSLARDAVRARDAAAEDAGLVFAEAGGAGGAGGAGGAGGGMPALALLSRDTERQLDGEGTLDVRLQNLLSTKLSLESEVRKLKLQLNEERAATHNGLTNHHDQEYETELETARKAVTEAKGRAARAEAEAALQAAALARLDAQLSRLRAQHQASQDSEHQLQQDRRRLQREAREALNRVEELETENGHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -