Cnem016575.1
Basic Information
- Insect
- Choreutis nemorana
- Gene Symbol
- -
- Assembly
- GCA_949316135.1
- Location
- OX438616.1:7791467-7792204[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-08 2.1e-05 24.5 0.0 1 37 15 51 15 58 0.91
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTATAAGCGGACGACTGATCGTCAATCCTGGAGTGAGGAATCAATGCGTAAAGCTATGGAAGCAGTTCGCAGTAACAAAATGGGCTGGCTTTTAGCATCGAAGACATTTGGAGTACCACAAGCAACACTAAGAAGACATGCTTTGGGTAGTAACAAAACTTTGGAGTCCTCTGCAAAGGGTCTAGGATGTTGGAAAGCTACTTTTCCACCTGATGTGGAAAGAAAATTAGCTGAGCATTTGAAATTACTTGAATCTCGTTTGTTTGGACTGACGCGAACGTGTGTTCAAGAATTAGCTTTTGAGTTGGCTGAAAAAAACGGTTTTGCACACAAATTTAACCcgcaaaaacaaaaagctgGACAAGAATGGTTAGAAGGGTTTTTGAGACgaaataaagatatttcttTACGCAAACCAGAAGCTACTTCAGCTGCTCGTGCTCAGGCTTTTAATCGACCTCAAgtcaataaattttttgagATTTACGGACATCTGCTGGAATCTGAGAACATTGGGCCACACAGAATTTATAATGCTGACGAATCAAGCCTGTCTACTGTACAAAAACCCGAGAAGATATTGGCTACTACTGGTAGGAAGCAAGTTGGCGTAATAACTAGCGCAGAACGTGGAACTAACACCACTGTTGTCTGTTGTGTTAATGCAATTGGTACCTTTGTTCCGCCGATGATGATATTTTCTaggaaaaatatgaaaaatgaaTGA
- Protein Sequence
- MPRNYKRTTDRQSWSEESMRKAMEAVRSNKMGWLLASKTFGVPQATLRRHALGSNKTLESSAKGLGCWKATFPPDVERKLAEHLKLLESRLFGLTRTCVQELAFELAEKNGFAHKFNPQKQKAGQEWLEGFLRRNKDISLRKPEATSAARAQAFNRPQVNKFFEIYGHLLESENIGPHRIYNADESSLSTVQKPEKILATTGRKQVGVITSAERGTNTTVVCCVNAIGTFVPPMMIFSRKNMKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343875; iTF_00876106; iTF_00373931; iTF_01461077; iTF_00876103; iTF_00205064; iTF_00924594; iTF_00422292; iTF_00276277; iTF_00276335; iTF_00772823; iTF_01152057; iTF_00874398; iTF_00876104;
- 90% Identity
- iTF_00373931;
- 80% Identity
- -