Cfor023235.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- stc
- Assembly
- GCA_964017055.1
- Location
- OZ024816.1:515028-518380[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.93 4e+04 -4.0 1.6 15 19 322 326 321 326 0.81 2 12 0.0069 2.9e+02 2.8 0.2 4 10 355 361 354 362 0.95 3 12 3.1e-05 1.3 10.3 16.9 4 19 369 384 367 384 0.93 4 12 1.5e-06 0.063 14.5 13.7 3 19 422 438 420 438 0.91 5 12 4e-09 0.00017 22.7 14.3 1 19 478 496 478 496 0.98 6 12 7.5e-05 3.2 9.1 17.3 4 19 544 559 537 559 0.88 7 12 0.016 6.8e+02 1.6 11.2 1 11 599 609 599 621 0.91 8 12 2.2e-10 9.4e-06 26.7 15.5 1 18 626 643 626 644 0.97 9 12 1 4.2e+04 -4.5 0.8 6 10 673 677 673 678 0.74 10 12 1 4.2e+04 -10.2 12.7 10 18 691 700 680 701 0.73 11 12 4.9e-08 0.0021 19.2 11.0 1 16 737 752 737 762 0.88 12 12 2.6e-07 0.011 16.9 11.3 4 19 771 788 769 788 0.93
Sequence Information
- Coding Sequence
- ATGTCGAGCTATACGTCGTCTTCCAGCCAGGACGATCGAAACAAGAATAGCTACGTGGACTTTAACGAATTCCTTGTGCAGCACAACTATGTGGGCGCAGGCAACTTTGGGGCGCAATTCAACGACTTCTACGGACAAGCGTACAGTCAGGTGCCTTATATGCCCAATGTCGACTTCAACCTTTTCCAGCCGCAGCCTAGCACTTCTCAAATGGGGCAGCCGCATGGTCTGGAGGCACAGTCCAACAGCAGCAGTGCCCTGGCGAGCAATTCCACGCTGGTCCCGACCGCAGCTGAGTTCGTTCCTCGCTTCAACAATTTGAACTTGAATGAGGCACAGCCGCAAGTTGATTTTTCTTTCGAGGCGGGCGATAGTGGTTTAGTGATCGACAATTGGAAGCCGCCGGCGTCCAACTCGCCTCCAGTTGAGAGCGGCCGCGATCGTAATCCTCATAAGAATCGCAACACGGGGGCTATAAGTAAACGAAACCATGGTCGGAATCAGTATTACGACCAGCAAAGATATGAGCGTAACAACAACGGCAACTACAACAATTCGAATGGCCATCGCTCCGAGAATAacatcatcaacaacaacagTAGCCGAAACAACCGGGGTCGAGACAACTGGCGCAATCACAGAGACAACAAAGCGTCCCCGCAAAAGAAGCAGCCCGATCTCTACTTGGACGATTCCCCGAAACACTCCAATTCGAGTGTAGAAGGGGAACCGACTGCTGTGACGACTTGCGCCCTATCGGAGGGAAACGTGGACTCTCAAAAGTGCTCGCAACGCGATAAACTCATTCGCGAGATTGAAACGCGACGGCTGGAGTGTCTGGTTTGCGTGGAGCCGATCAAGGGCCACCAGCCCGTCTGGTCCTGCTACAACTGTTACCACATTCTCCATCTGTCGTGCACCACGAAGTGGGCGTCCAGCTCTAAATCGAATGACGGCTGGCGTTGTCCCGCCTGCCAGAATGTCACAAAAACCATTCCCCGTGAGTACTACTGTTTTTGCGGAAAATTGAAGAATCCGTCGTACAATCGAAACGACATGGCCCACACTTGTGGTGAGCCGTGCGGTCGTAAAGAGTCCTGTCCGCATCCCTGCACGTTGCTCTGTCATCCGGGACCGTGTCCGTCGTGCCAAGTGATGGTGAAGCGGGAATGCGGCTGTGGACGGACAACCACCTCGACGCAGTGTTGCATGCGCGAGGACATTGAGTGCGACGCGACGTGTGAGAAGCTGCTCAATTGCGAATTGCACACGTGCGGCGAGTCGTGTCATAAGGGCAAGTGCCCGAGTTGCAAGCATAAAGTGGATCAACAGTGCTTCTGTGCTAAGGTCAATCGTCAGGTGGCCTGCACGAGAGAATCGAACGATAAGAAGCAGTTCTCGTGCGGGAAGACTTGCAACAAGCCGCTGGGCTGCGGTAACCACAAATGCAAGGACAATTGCCATGCGGGCGAGTGTAAGCCGTGTAAATTGACGCCGCAGATGTTGAAGTCGTGTCCCTGCGGGAAGATGATGATTAAAATGGATGAACGTGAGTCCTGTCTGGATCCGATCCCGACGTGTACTGGTGTTTGTGGAAAGACCCTGAAATGCGGACCTCCTgCGAAACCGCATCACTGTACGAGTCAGTGCCACACCGGAAACTGTCCGCCATGCACCAAGCAAACGGCCGTTCGTTGTCGCTGCGGTAATATGGACCAAATGATAAAATGCCGGCAACTTGTGACGCGTGCCGATGATGCACGCTGTAAGAAACGCTGCACGAAGAAACGAAGCTGCGGCAAGCACAAGTGCGCTCAAGAGTGCTGCATTGATATCGATCATATTTGCCCAATGCCTTGCAACCACACGCTCTCGTGCGGCAAGCACAAGTGTGACCAACCATGTCATCGCGGTAATTGTCCGCCCTGCTATCGCAGCTCTTTCGACGAACTGTTCTGTGAATGTGGAGCGAATGTAATTTATCCTCCCGTTCCGTGCGGAACAAAACGACCGGTCTGCAAAAATCCCTGCACTCGCCAGCATCCTTGCGATCATCCGGTTCAGCACAATTGCCATTCGAGCCCAACGTGTCCGCCGTGCATCGTCCTCACCACGAAGTACTGCTTCGGCAGACACGAACAACGCAAAACGATTCCATGCACACAGGCGAGCTTCAGTTGCGGTCTGCCTTGCAACAAGGATTTGAGTTGTGGCCGCCATAAATGTATAAAACCATGTCACGATGGTGTCTGTCAGGCGCCCGGCGAGGTTTGCAAGCAGACTTGTCAAACTACGCGGGTTACGTGCGTCCACAAATGCAGTGCTCCGTGCCATGATGGCGATTGCCCGGACATACCATGTCGCGAGAGTGTTGAAGTAACATGTGAATGTACCAATCGCAAGCAAATGCGTAACTGTCATGATTTCGCAAGTGAATACAGACGTATCGCGACCGCTAAACTCGCCTCGTCCATGCAAGAAATGCAACGGGGCAATACGGTGGATCTGAAAGACATATTGGGACCCATCAAGATGACCAACAACAAAACGCTGGAATGCAACGAGGAGTGCAAAATACTCGATCGCAATCGACGTCTTGCACTCGGTCTTCAAATACGCAATCCCAGTCAACAAAACAAGCTCAACACGCGCTACCCCGATAACATTCGTAGCTGGGCTAAGAAAGATCCGAATCTGGTGAAAATGATCCACGACAAACTCACGGAACTGGTGAAATTGTCGAAAGAGAGTAAACAAAAGTCGCGCAGTCACTCGTTTCCGACGATGAATCGCGAGAAGCGACGACTCGTTCACGAAATGTGCGGAATGTTTGGTGTGGACTCGATGGCCTATGACGCGGAGCCCAATCGAAATATTGTAGCCACGGCGCATAAAGAACGGTCCTGGCTGCCGGCTATGAGTATTATGGAAATTGTTGAGCGCGAGAGCGGACAACGACGAGTTCCAGTGCCAAATAACAATGCTTGGGGATTGAAGAAATGA
- Protein Sequence
- MSSYTSSSSQDDRNKNSYVDFNEFLVQHNYVGAGNFGAQFNDFYGQAYSQVPYMPNVDFNLFQPQPSTSQMGQPHGLEAQSNSSSALASNSTLVPTAAEFVPRFNNLNLNEAQPQVDFSFEAGDSGLVIDNWKPPASNSPPVESGRDRNPHKNRNTGAISKRNHGRNQYYDQQRYERNNNGNYNNSNGHRSENNIINNNSSRNNRGRDNWRNHRDNKASPQKKQPDLYLDDSPKHSNSSVEGEPTAVTTCALSEGNVDSQKCSQRDKLIREIETRRLECLVCVEPIKGHQPVWSCYNCYHILHLSCTTKWASSSKSNDGWRCPACQNVTKTIPREYYCFCGKLKNPSYNRNDMAHTCGEPCGRKESCPHPCTLLCHPGPCPSCQVMVKRECGCGRTTTSTQCCMREDIECDATCEKLLNCELHTCGESCHKGKCPSCKHKVDQQCFCAKVNRQVACTRESNDKKQFSCGKTCNKPLGCGNHKCKDNCHAGECKPCKLTPQMLKSCPCGKMMIKMDERESCLDPIPTCTGVCGKTLKCGPPAKPHHCTSQCHTGNCPPCTKQTAVRCRCGNMDQMIKCRQLVTRADDARCKKRCTKKRSCGKHKCAQECCIDIDHICPMPCNHTLSCGKHKCDQPCHRGNCPPCYRSSFDELFCECGANVIYPPVPCGTKRPVCKNPCTRQHPCDHPVQHNCHSSPTCPPCIVLTTKYCFGRHEQRKTIPCTQASFSCGLPCNKDLSCGRHKCIKPCHDGVCQAPGEVCKQTCQTTRVTCVHKCSAPCHDGDCPDIPCRESVEVTCECTNRKQMRNCHDFASEYRRIATAKLASSMQEMQRGNTVDLKDILGPIKMTNNKTLECNEECKILDRNRRLALGLQIRNPSQQNKLNTRYPDNIRSWAKKDPNLVKMIHDKLTELVKLSKESKQKSRSHSFPTMNREKRRLVHEMCGMFGVDSMAYDAEPNRNIVATAHKERSWLPAMSIMEIVERESGQRRVPVPNNNAWGLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00793952;
- 90% Identity
- -
- 80% Identity
- -