Cfor008032.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024814.1:4653074-4655027[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00022 1.5 10.2 0.4 23 48 262 287 248 290 0.86 2 6 0.086 6.1e+02 1.8 0.1 22 48 350 376 344 380 0.87 3 6 0.42 3e+03 -0.4 0.0 17 32 387 402 383 419 0.73 4 6 0.87 6.1e+03 -1.4 0.1 22 44 448 470 445 474 0.72 5 6 0.00074 5.2 8.5 0.0 20 45 474 499 458 506 0.86 6 6 0.0024 17 6.8 0.0 22 46 504 528 499 535 0.87
Sequence Information
- Coding Sequence
- ATGCTGCGAACGTCACCCGAACAACATTCAACTTTCACCCGAATGCCCGACGACACCAATCATCCAATTGACAGTTGTGTACAACTTTTGTGGTATGTCAAGCCGAAGGATGTAAACAGTAAGCCGTGCTTCAATTATGTTTTCGTAGCTTCCACGGTGCAATTTTCACCATTTCTGACTAAAAGTGATCGCAAAATGTTCTGTCGCATCTGCTTGGTGGAGCATACCGCCGGTTTGCCAATATTTGATGATTATCAGGGCGAATTTTTGCCCGGAATTGTTCGGACAATAGCTGGTGTGGAgATAATCCCCGGCGACGGTCTGCCCGAGAATGTTTGCTACGAATGCGCACATATCCTGCTTCAAGCTCACGATATTAGAAAAAGATGTTTAGAATCGGATGCCGTTTTGCATGCCAAGGTGCTGGCCGAGCAGCACTCACAGGACTCGCTACAAAAAATCGAGTCGGAAAAGAACATTTTCATATGGGAAACCATCATCCAAACGTACGAGCCACCACCACCGCCTGCGTTACCCATACCCATCGAGGCGGCCAACTCACTCGACAACCACGTGCACAATACATCACTGGACACCAGTGCCAATTGGTCGGAGGATAGGGACGATAACATCTCGGACGCCGTTTCGGACCGAGACATTGGCGACGGCGACAACGACACTCTCAACGATCACGACGGCCAAGAGATCTACAAATGCGCCTACTGCCCTAAAAAATTCTCAAGCAAAACTCGCTACCATCGCCACCATCAATATCACCGACAGAAGAAGGCCAAATGTCCGATTTGCGGCAACGAATTCACTCACAAGTCGAATCTCAAGCGGCACATGCTCCTGCACGAGTACAAGGAGGAGTTCAAGTGCAATCAATGCGATGCAGTATTCTATGACACGAACGAGCACTACGAGCACGTGAAGAATCACATCAAGAACGAGACGTACATTCACGAGTGCACCGTGTGCGGCGAACAGACCAAATCCGTGGCCACGCATCTCGCTCACATGAAGAAGGAGCACGACATCACCGTCGATCGACCGTTCAAATGTCTCATCTGTTCCATACACTTCAAATCGAAACAAGGACTCTATCGTCACGTCGACAACATACACGAGGCGAGTCGCAAGAATCTCAAAGCCAACGACAAGAACAACAGCGAGAAGAACTTACTGTGCCCCACATGCGGCAAGAAGTTCCCGGACAACTTCCACTTGCAAGTTCACTTGCGCACTCACACGCTGGAGCGTGCGTTCAAATGCACCGAATGCCCCAAATCGTTTGCCCAAGCGTCCGGGCTCAAGATGCACGCATTCACGCATACGGGCGAGAAGCCGTTCGTTTGCCGTGTGTGTGGCAAACGATTCCTTAAATATGCACATGTGCGCGAACATTTGCGAACGCACGCCAGTGAGAAGCCGCACGTCTGCAAGATTTGCAACAAATCGTTCCGCGTGAAAGGCAACTTGACCGCTCACATGGCCACGCATACGGGCGACAAGCCATTCGCCTGCGACGTGTGCGGCAAGAGCTATGCCCAGAGCAAGAAGTTGCGGACGCATTTTGCAAAGGTGCATCGCAAGCAGCAGCCGCCAGCCGAAGAGGAGAGTTGA
- Protein Sequence
- MLRTSPEQHSTFTRMPDDTNHPIDSCVQLLWYVKPKDVNSKPCFNYVFVASTVQFSPFLTKSDRKMFCRICLVEHTAGLPIFDDYQGEFLPGIVRTIAGVEIIPGDGLPENVCYECAHILLQAHDIRKRCLESDAVLHAKVLAEQHSQDSLQKIESEKNIFIWETIIQTYEPPPPPALPIPIEAANSLDNHVHNTSLDTSANWSEDRDDNISDAVSDRDIGDGDNDTLNDHDGQEIYKCAYCPKKFSSKTRYHRHHQYHRQKKAKCPICGNEFTHKSNLKRHMLLHEYKEEFKCNQCDAVFYDTNEHYEHVKNHIKNETYIHECTVCGEQTKSVATHLAHMKKEHDITVDRPFKCLICSIHFKSKQGLYRHVDNIHEASRKNLKANDKNNSEKNLLCPTCGKKFPDNFHLQVHLRTHTLERAFKCTECPKSFAQASGLKMHAFTHTGEKPFVCRVCGKRFLKYAHVREHLRTHASEKPHVCKICNKSFRVKGNLTAHMATHTGDKPFACDVCGKSYAQSKKLRTHFAKVHRKQQPPAEEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00322821;
- 90% Identity
- iTF_00322821;
- 80% Identity
- iTF_00322821;