Cfor037296.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024818.1:58179376-58180268[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.19 1.3e+03 0.8 0.1 26 44 49 67 40 71 0.84 2 5 0.0012 8.3 7.8 0.1 23 46 74 97 71 103 0.88 3 5 0.00024 1.7 10.0 0.1 21 48 100 126 95 131 0.84 4 5 0.01 71 4.8 0.1 21 46 128 153 126 158 0.91 5 5 0.0003 2.1 9.7 0.1 20 45 155 180 153 186 0.89
Sequence Information
- Coding Sequence
- ATGGCTTCGCCTCATAGTCAACCAACCGAGTTCAAGCCAGCTTACAACTGTAGGAAATGTAAAGTTtCATTTACAACAAAACGTGAGTCGCTTTTGCATAAAAAGACTGTACACGAATCGGATTTGACGGAGCAAAGCAAATTCCAATGTAGAATATGCAGTAAAGCGTTTTCAAATCATGGGAACATGTATCGTCACATGAAGGGCCATGGCGACATACGACCACACGAATGCCAAATCTGTGGAAAATCCTTTGCCCAAGCGACTAACCTGAACCGACATTATTCCGTTCATAACGGTGACCGTCCGTTTCAGTGTTCACTGTGCGACAAATCGTTCACACAACAAGGAAACTTACGGCGACATGAGCTAGTGCATACGGGGGAGAAACCGTTTCGATGCAAGCGCTGTGGACGCATGTTTTCGCAAAGGATCAACCTAAAAAAACACGTCATGCTACACCAGGGCTATCGGCCATACACCTGCGACATATGCAGCAAGTCATTTTTGCAATTGCAAAACTATAAAAAGCATTTGCAGCGACACGAAGAGAGCGGCGTCAAGTCCGAGGTAACTGATGTGATGTATGAGTGTGCGATATGCGGCGTAatcttttcaaattttacagAATTTCAAGGGCATGAAATATTCTGTGAAGTTGCGGGCGAGGAACAGGTGGAAACGTCATCATTCGACATAGAGCCACAGCAAGAAGAGGATGACAAAATTCAATTGGAAGTTCCGATTGATCCACTATCGATTACATAA
- Protein Sequence
- MASPHSQPTEFKPAYNCRKCKVSFTTKRESLLHKKTVHESDLTEQSKFQCRICSKAFSNHGNMYRHMKGHGDIRPHECQICGKSFAQATNLNRHYSVHNGDRPFQCSLCDKSFTQQGNLRRHELVHTGEKPFRCKRCGRMFSQRINLKKHVMLHQGYRPYTCDICSKSFLQLQNYKKHLQRHEESGVKSEVTDVMYECAICGVIFSNFTEFQGHEIFCEVAGEEQVETSSFDIEPQQEEDDKIQLEVPIDPLSIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00322848;
- 90% Identity
- iTF_00322848;
- 80% Identity
- iTF_00322848;