Cfor029460.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024817.1:11047418-11048887[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00086 6.1 8.3 0.1 21 46 206 231 200 238 0.82 2 10 0.086 6.1e+02 1.8 0.1 22 49 235 261 228 265 0.81 3 10 0.0021 15 7.0 0.3 25 45 265 285 251 288 0.86 4 10 0.034 2.4e+02 3.1 0.1 21 46 289 314 285 321 0.83 5 10 0.036 2.5e+02 3.1 0.1 21 49 317 345 312 350 0.84 6 10 0.17 1.2e+03 0.9 0.4 20 34 344 358 332 371 0.70 7 10 0.00013 0.93 10.9 0.0 21 45 373 397 360 405 0.89 8 10 0.27 1.9e+03 0.2 0.1 21 44 401 424 397 428 0.88 9 10 0.017 1.2e+02 4.1 0.2 21 45 429 453 417 457 0.84 10 10 9.7e-05 0.68 11.3 0.1 23 51 459 487 453 489 0.87
Sequence Information
- Coding Sequence
- ATGGCTGGCAAAATGCTCGAAATGAAAAGCATCCTGCTGGCGGATTTTACAGCCGATAGCTGCAGCCTATCGGCCGGCGACGAGAGCAATGAATCGACCTTCATCCTGACCGAGGATCAAATCAAAAAGGAGCCCGAATTCATCATCGAGGACGACgaagaaaatgacaaattgCTCGCGTACTTGCGGGACAAGAATTCGGACGAAATGCCCGCAAGGGATGATTTGGAGTGGCACAGTTGCATCGTGTGCGAGGAGCGGTTTCTCAGCATTGCGGATCTGTCGCTACACGTGCAGCGACACGTAAAGGACGAGCCCGCGAGCAACAAATCCATGACCAAGTCCAAGCGGCGCAAGTATGGGATCCGATCGGAGTACACGGGATTCACCAAGGACGAGCTCTTTCGCGACTACGTCAAGATCAAGGTGAGTCTGGCCGGGGACGCGAGCTACGTTTGCAAGCTGTGTCCGGACAGTGTCTTCCAGACGCAAACCGCCATCCGGAATCACATGCGAATCCACGAGAACCCCGTCTACAAGGACCGCAACTGCTCGGTGTGTCACAAGACGTTCTTGCGACGTGACACGCTCCTCGTGCACATGCGAACGCACACCCGCGAGCGTCCGTTCACCTGTGATATTTGCCAAGCCACTTTTGCACATTCCAGCTCGCTGGTCTCGCACAAGCGGATCCACAGCGGCGACAAGCCGTACGAGTGTGACGTGTGCCACCTGAAATTCCGCGAGTCCGGCCAAATGTCGGCCCATCGGCGCATTCATTTCGACAAGACGTTCCAGTGTCCGCAGTGCAAGCACTTCTACTCGTCATCGAAGAATTTGCGAGCTCATTTGCGTACGCACACGGGCGAGCGACCGTACACGTGCGACGAGTGCGACAAAGCGTTTCGCACATCCACGGCACTGACACTGCACGCGCGCGTGCACACGGGCGAGAAGCCGTACAAGTGCCAAACGTGCGGCTTTTCGACGAAGCAGTCGGGCTGCCTGAAGGCACACATGCGCACGCACACGGGCGAGAAGCCGCACATTTGTGACATCTGCCAGCGCGCCTACTCGGAGAAGAAGCGACTCGTAACGCACTACAGGACCCATACGGGCGAGCGGCCGTACAAGTGCCCCTTTTGCGACGCCACCTTCATTCGCAGCGATAACTTGAAGACCCATGTGCGAACGCATACCGGCGAGCGGCCCTTCAAGTGTGAGAGCTGTGATAAGACTTTCGCCCAGAAGACGACGTTGAGGACGCATCAGCGTGTACATTCGGGCGAGAAGCCCTACGAGTGTAAATACTGTAAGCAACGATTCCGGCAGTCGGGGATCCTGATCACGCATCTGCGCACGCACGAGGGTACGGCGCCGTATCAGTGTCAGGTTTGCGACAGGTCGTTCAAACAGAACGGAAACTTGCGAAGGCACTATGCGGTCGATCACAACGGGGATCCTTATTAG
- Protein Sequence
- MAGKMLEMKSILLADFTADSCSLSAGDESNESTFILTEDQIKKEPEFIIEDDEENDKLLAYLRDKNSDEMPARDDLEWHSCIVCEERFLSIADLSLHVQRHVKDEPASNKSMTKSKRRKYGIRSEYTGFTKDELFRDYVKIKVSLAGDASYVCKLCPDSVFQTQTAIRNHMRIHENPVYKDRNCSVCHKTFLRRDTLLVHMRTHTRERPFTCDICQATFAHSSSLVSHKRIHSGDKPYECDVCHLKFRESGQMSAHRRIHFDKTFQCPQCKHFYSSSKNLRAHLRTHTGERPYTCDECDKAFRTSTALTLHARVHTGEKPYKCQTCGFSTKQSGCLKAHMRTHTGEKPHICDICQRAYSEKKRLVTHYRTHTGERPYKCPFCDATFIRSDNLKTHVRTHTGERPFKCESCDKTFAQKTTLRTHQRVHSGEKPYECKYCKQRFRQSGILITHLRTHEGTAPYQCQVCDRSFKQNGNLRRHYAVDHNGDPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01376062;
- 90% Identity
- iTF_00322745;
- 80% Identity
- iTF_00322745;