Basic Information

Insect: Chloromyia formosa
Gene Symbol: -
Assembly: GCA_964017055.1
Location: OZ024816.1:1177652-1183318[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.6e-05 0.0058 18.2 2.9 1 23 439 461 439 461 0.98

2 18 1.4e-05 0.0015 20.1 0.4 1 23 467 489 467 489 0.97

3 18 7.6e-05 0.0079 17.8 1.7 1 23 495 517 495 517 0.98

4 18 8.2e-05 0.0085 17.7 3.6 1 23 523 545 523 545 0.97

5 18 0.00035 0.036 15.7 4.9 1 23 551 573 551 573 0.98

6 18 0.00013 0.013 17.1 5.7 1 23 579 601 579 601 0.97

7 18 5.9e-07 6.1e-05 24.4 4.3 1 23 607 629 607 629 0.98

8 18 2.2e-07 2.3e-05 25.8 2.4 1 23 635 657 635 657 0.97

9 18 0.0003 0.031 15.9 5.7 1 23 663 685 663 685 0.97

10 18 0.00012 0.012 17.2 6.4 1 23 691 713 691 713 0.98

11 18 3.2e-05 0.0033 19.0 4.7 1 23 719 741 719 741 0.98

12 18 2.3e-05 0.0024 19.4 7.1 1 23 747 769 747 769 0.98

13 18 1.7e-06 0.00017 23.0 7.2 1 23 775 797 775 797 0.98

14 18 0.00025 0.026 16.1 9.1 1 23 803 825 803 825 0.97

15 18 0.00041 0.043 15.5 9.5 1 23 831 854 831 854 0.95

16 18 0.00021 0.022 16.4 0.4 1 23 860 882 860 882 0.97

17 18 0.0021 0.22 13.2 3.3 1 23 892 914 892 914 0.98

18 18 5.9e-06 0.00061 21.3 1.7 1 23 920 943 920 943 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.6e-05	0.0058	18.2	2.9	1	23	439	461	439	461	0.98
2	18	1.4e-05	0.0015	20.1	0.4	1	23	467	489	467	489	0.97
3	18	7.6e-05	0.0079	17.8	1.7	1	23	495	517	495	517	0.98
4	18	8.2e-05	0.0085	17.7	3.6	1	23	523	545	523	545	0.97
5	18	0.00035	0.036	15.7	4.9	1	23	551	573	551	573	0.98
6	18	0.00013	0.013	17.1	5.7	1	23	579	601	579	601	0.97
7	18	5.9e-07	6.1e-05	24.4	4.3	1	23	607	629	607	629	0.98
8	18	2.2e-07	2.3e-05	25.8	2.4	1	23	635	657	635	657	0.97
9	18	0.0003	0.031	15.9	5.7	1	23	663	685	663	685	0.97
10	18	0.00012	0.012	17.2	6.4	1	23	691	713	691	713	0.98
11	18	3.2e-05	0.0033	19.0	4.7	1	23	719	741	719	741	0.98
12	18	2.3e-05	0.0024	19.4	7.1	1	23	747	769	747	769	0.98
13	18	1.7e-06	0.00017	23.0	7.2	1	23	775	797	775	797	0.98
14	18	0.00025	0.026	16.1	9.1	1	23	803	825	803	825	0.97
15	18	0.00041	0.043	15.5	9.5	1	23	831	854	831	854	0.95
16	18	0.00021	0.022	16.4	0.4	1	23	860	882	860	882	0.97
17	18	0.0021	0.22	13.2	3.3	1	23	892	914	892	914	0.98
18	18	5.9e-06	0.00061	21.3	1.7	1	23	920	943	920	943	0.97

Sequence Information

Coding Sequence: ATGAACACAACGGACCGATCGGTGGGCCACGAGAATCCCGGAGCGGATTCTCAGATCCGGCAGTCGCCGTCGCAACCACAGCAGCAGGCGCATCCCCAACAACAAGCGCAACACCCCCAACATCCTCGCCACATGCATCAACAGCAAATCGACGAGCAAAATcgtcaacagcagcagcagcagcaacagcagcagcaacaacaacagaatcagcatcaacatcaggCTCAAGGCGGCGGACATTCACACGATCAGCAAAGAATCGGGGGTGTAATTCAACCTGTGAGTGAAGCAGATCTGAAGCATCCTTTGCCGCTGGCCAATGCACCGCACCTCGGCAAGTACTGGGTGGTTACAAATCTTTTCCAGGGTCCCGGGCAAAATGCAACGACCTACAATGTTGCAACCGGTCAGCCCACATCATCGGCCGGTGTCGTTATACCCACGACACAATCCATTCAATCGCACACAACGATAAAATCGGACGCGATTAAGCAAGAGGAAGCCCATATTGCCAATATTCATCAGCAGGGTCGTATCCAGCAACAAATTGTTACGGTCAGTGCACCAAATACAATTCAGATACCAAATTCGATGATTGTCACGCAACAAGGATCGCAACAGATCACAAATGCAACTCTCATACAAACTGGCCAGCCACCTGAGCACATTCAGGTGGCGGTGAATCCGGAAAACAGTATTATGATAATGGACACAACACAAGCTTCCAATAAGAATGAGAAAATTATTACAAACCAAAATATGAACACGAACGAACCAATGCAGGGCATTGAACGGGTTAAGGAGGAGAAACCTTTTGCCAATTGCAAGATGTTACCGCATCAGCAGCAGCAAATGCATGGACAACAGACTACGTCCGAGCAAAAGATGCACATACCGCACTTGTTGGACGTGCGAAATGCCGATGGCTCGCTGATTAAGATTCAGCCACAGGATCAGGAGATGGGCAAACAGTTGGGCGTGGAAATGTATAAAGTGAATATCGAAGATTTGAGCCAGTTCCTGTCATATCATGAAGTCTTTGGGAAATTGCACGGCGGCGACGTTATCACACATCCGATTTCACATTCGGGCACGCAAGTGGTGAATACAATTAGCAATGCACCGATCACCACCGTGAAGACTACTTCGGCCCCGAACGTAGTAACGTCTGGTGGCAACATAACGACAACTACGGGCGAATTACTAATgccgaaaatggaaaatattactCAAATGGCGGGAGTAAATCAAGTGCCGGGCACAACCGCTACCCTCACAAATGCCGATGGAACGACAATAACACCAGCCACCCATACGTGCGACATTTGTGGTAAAATGTTCCAGTTTCGCTATCAGCTAATTGTGCATCGGCGCTATCACAGCGAACGCAAGCCGTTCATGTGTCAGGTGTGCGGGCAGGGTTTCACAACATCCCAAGATCTGACGCGACACGGCAAGATTCATATCGGCGGTCCCATGTTTACGTGCAACGTTTGCTTTCATGTGTTCGCCAACGATGCCAGTTTAGAGCGTCACATGAAACGACACTCGGCTGATAAGCCGTTCGCTTGTACTATGTGCCAGAAAACGTTTGCCCGGAAGGAGCACTTGGACAATCATTTTCGCAGTCACACTGGCGAAACACCGTTCCGGTGCCAATTCTGTGCTAAAACGTTTACGCGCAAGGAGCACATGGTCAATCACGTGCGAAAACATACTGGTGAGACGCCACATCGGTGCGATATTTGCAAGAAGTCCTTCACCCGAAAGGAACACTACGTCAATCACTATATGTGGCATACAGGTGAAACGCCGCATCAGTGCGAAGTTTGCGGCAAGAAGTATACACGAAAAGAACACTTGGCGAATCATATGCGTTCCCACACAAATGACACGCCGTTCCGATGCGAAATTTGCGGGAAGAGCTTCAGCCGAAAGGAGCATTTCACAAATCACATATTGTGGCACACAGGCGAGACACCCCATCGTTGCGATTTCTGTGCGAAGACATTCACTCGAAAGGAGCATTTGCTGAATCATGTGCGACAGCACACTGGGGAATCACCGCATCGTTGCACATATTGTCTAAAAACATTTACGCGCAAGGAGCATCTTGTGAACCACGTACGGCAGCATACCGGTGAAACACCATTCAAATGTACATTTTGTACAAAAGCATTCACCCGCAAGGATCACATGGTCAATCACATTCGCCAGCATACAGGCGAATCGCCGCACAAGTGTACATACTGTACCAAAACGTTCACGCGCAAGGAACACCTTGTAAATCACGTGAGACAGCATACCGGCGAGTCGCCACATCGTTGCTCGTACTGTAACAAGACATTTACCCGAAAGGAGCACTTGACTAATCATATCCGCTTGCATACGGGCGATTCGCCGCATAAATGTGAATGTTGCGGAAAGACGTTCACGCGCAAGGAGCACTTGAATAATCACATGAAGCAGCATTCAAGCGACAATGCGCACTGCTGTAATGTTTGCAATAAACCATTCACTCGTAAGGAGCATTTGATAAACCATATGTCACGTTGCCATACTGGAGATCGACCATTTGCATGTGAAACGTGTGGAAAGTCATTCCCACTAAAGGGCAATCTGATCTTCCATCAGCGAAGTCATACAAAGGGCCAGGACGTTGAGCGACCATTCCGTTGTGAGAAATGTCCCAAAGATTTCATTTGTAAAGGTCATTTGGTGTCGCATATGCGCGCTCACTCTGGCGAGAAGCCGCACGTTTGCACGCTGTGCAGCAAAGCGTTCGTTGAGAAAGGCAATCTGAAGCGGCACATGAAAATGAATCACCCGAACGTTATTATTCCGCCTCTAGGTCTCGTTACGAACATCAAAACCGAAGCCAATCCAACTACGGTGACTACAGTCGTTTCACAATACAATACGATTAAAACGGAGACCAATCCCACCACAATGGCCACGGCTCCACAATACATGAACGAACGAATTCAATTGCTCACGAAAGCCAATCTGCTACCCATTAATCCATTGATTCCTCACCAAGCGCCTACAATGCATACGATACAACAGATAACCGCTACATCAGCCAACTCCACAATTAACACTAGCACACTATCGGGCCCGACTGGTCTCGTGCCTATTGTCACTTCTACGATTACATCACATGCCAgccaacagcagcagcagcagcaacaacagcagcagcagcagcaacagcatgTATCAGCAGCGCAGATGCAACAACATCCCCAACAGCAGCAACCTCCcccacaacaacagcagcaaggCCAGCAACAGCAACAAAATAATCAACAGCAGGGCGACCCAACACAAACCGTTCCCATTGCAATCATACAAGCCGGTGATCCAGCAACAATCACGAGAGCATCGATCCAGCTTCAACACTTGCCGCCAGGAGTTGAACATCATTCGGTGGTATATTAG
Protein Sequence: MNTTDRSVGHENPGADSQIRQSPSQPQQQAHPQQQAQHPQHPRHMHQQQIDEQNRQQQQQQQQQQQQQQNQHQHQAQGGGHSHDQQRIGGVIQPVSEADLKHPLPLANAPHLGKYWVVTNLFQGPGQNATTYNVATGQPTSSAGVVIPTTQSIQSHTTIKSDAIKQEEAHIANIHQQGRIQQQIVTVSAPNTIQIPNSMIVTQQGSQQITNATLIQTGQPPEHIQVAVNPENSIMIMDTTQASNKNEKIITNQNMNTNEPMQGIERVKEEKPFANCKMLPHQQQQMHGQQTTSEQKMHIPHLLDVRNADGSLIKIQPQDQEMGKQLGVEMYKVNIEDLSQFLSYHEVFGKLHGGDVITHPISHSGTQVVNTISNAPITTVKTTSAPNVVTSGGNITTTTGELLMPKMENITQMAGVNQVPGTTATLTNADGTTITPATHTCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCNVCFHVFANDASLERHMKRHSADKPFACTMCQKTFARKEHLDNHFRSHTGETPFRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGETPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHVRQHTGETPFKCTFCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLVNHVRQHTGESPHRCSYCNKTFTRKEHLTNHIRLHTGDSPHKCECCGKTFTRKEHLNNHMKQHSSDNAHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLIFHQRSHTKGQDVERPFRCEKCPKDFICKGHLVSHMRAHSGEKPHVCTLCSKAFVEKGNLKRHMKMNHPNVIIPPLGLVTNIKTEANPTTVTTVVSQYNTIKTETNPTTMATAPQYMNERIQLLTKANLLPINPLIPHQAPTMHTIQQITATSANSTINTSTLSGPTGLVPIVTSTITSHASQQQQQQQQQQQQQQQHVSAAQMQQHPQQQQPPPQQQQQGQQQQQNNQQQGDPTQTVPIAIIQAGDPATITRASIQLQHLPPGVEHHSVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01376054;
90% Identity: iTF_00793687;
80% Identity: -