Cfor007724.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_964017055.1
- Location
- OZ024813.1:169241170-169258082[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.15 6.4e+03 -2.7 4.7 29 80 80 131 57 155 0.42 2 3 3.6e-113 1.5e-108 363.9 33.4 1 299 204 488 204 489 0.95 3 3 0.099 4.2e+03 -2.1 4.1 220 244 517 541 493 562 0.46
Sequence Information
- Coding Sequence
- ATGGAAGTGGCGCAGGATGTGAGTGCTGGCATTCGGGCCAATGGTGATAGTGAAGAAGTGATTGCAATACCAACGATCGCCCCTGAACCAAACAATAATATTCCAATCGCTTCAAAAAACCAGTCAAAAGAAACGAACGACCCAGATAGTGGCagtgctgatgatgatgatgaagtcgaAAACGATGACAATAATGATGAAGAGTTCGATTTCGATGACAACGATTTCAATTCCGCGGAGAGTGATGATAACGACGATACGACTATCCATTGTTCGTCTGTTAGTGGGACGGATACTACTAGTACTAGTGCAACAGATAACGCCAAAAATTTAGTAACCGATGCCCAAAATGCCGCTTTAATAGAGAGTCATAGGACATCGTCCTCGGTGGAAGGGAGTTTTGCCGAAAGCTACCGTGACGATGATAATGAGAATGTGTCCAATTCGGAACACAAGACGATTATACGGATCGATAGTGCGGCTACAGATCAACCAAGGAGCATGGATGGTCTTGATGTCGCTGTTTCCGATGAGGAGGACGACAACGTGTTTTACAGCGATGAAGAGACTGATCTGCTGGTGACATTTTTGGATAAATCTAATGAAATTGCCGAGGCAAGATTAGCAGCACGGCGACAGGCGCGTGCCGAGGCACGCGAAATACGAATGCGTGAACTGGAGCGACAGCAGAAAGAACAGGAACAAAATGCCGACAGGGTATTCGATATGCAGACAGCGGCTGGCATTGACCCGCTGTCTCGGTCTCGACACACCCTGTCGGCAGGTTCGGCACGAGGTAGTTCGTCGTTATCGTCACGACGTAGCAGCGAGGATTCACTGGAGGAGGAGGGCCGAAGTTTACGAGACATTCGGCACGAACTTAAGGATGTCGAGGAACGATTTCGTAAGGCCATGATCGCTAATGCTCAACTCGACAACGAACGTGCTTCACAATCGTATCAAATACAACTTCTCAAAGATAAACTCGAGGAGATGGAGGAGAGCTTTGCACAATTACAGCGTGAATACAAAGAAAAATGTCGCGATCACAATGCCCTTAAGCGAAATTTAGATAAAGTTGAGGAAGAATTGAAATTAGTTCGGGGACAATTAGACGAACGTGATACTCTGATATCCGAACAGGGTTTAGTTATAGTTTTGATAGAAAATGAAGATGGCTCAGATGCCAAACGCGCTCTAGTCACTGTAGATAACGCACAACTTTTAGGTTCAGTACAAGGCTCATTAGATGTTCGGCTCAAGAAATTCACCGAAGAGAAACAGGAGCTACAAAAAGAAGTCGCCAATCTCCAGCAACAACTTAGTGATTTAAAATCACAACGAAGAGGCGGTTCTATGAATGGTCCCGTGGGAAATGACGACGAATGGGATGCGCAAAGGGAAGCCAACAAATTGATATCAGAATACAAATATAAATTGCAAAAAGCTGAACAAGAAATTGCTAGTCTACAAGCCAGCTTAGCTCGATCGGAAACACAAGTTATACGATATAAAAGTACAGCAGAGGCCGCCGAAAAAGCGGAGGctgaattgaaaattgaacgaaGGAAACTGCAGCGAGAGAATCGCGAAGCCATGGAACGTTTAGAAGAACTCGAAACGTCTAACAATCATCTGCTTAAACGTCTAGACAAACTGAAGAATGCAAAAAGTGCATTGCTCAAAGACCTCTGA
- Protein Sequence
- MEVAQDVSAGIRANGDSEEVIAIPTIAPEPNNNIPIASKNQSKETNDPDSGSADDDDEVENDDNNDEEFDFDDNDFNSAESDDNDDTTIHCSSVSGTDTTSTSATDNAKNLVTDAQNAALIESHRTSSSVEGSFAESYRDDDNENVSNSEHKTIIRIDSAATDQPRSMDGLDVAVSDEEDDNVFYSDEETDLLVTFLDKSNEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRHTLSAGSARGSSSLSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFAQLQREYKEKCRDHNALKRNLDKVEEELKLVRGQLDERDTLISEQGLVIVLIENEDGSDAKRALVTVDNAQLLGSVQGSLDVRLKKFTEEKQELQKEVANLQQQLSDLKSQRRGGSMNGPVGNDDEWDAQREANKLISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -