Cv-a017216.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- PRDM7
- Assembly
- GCA_963691955.1
- Location
- OY829907.1:2654158-2661443[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.015 3.7e+02 1.7 0.0 26 45 297 316 291 319 0.89 2 11 0.0008 19 5.9 0.0 21 45 320 344 309 348 0.85 3 11 5.4e-05 1.3 9.6 0.0 21 47 348 374 344 380 0.86 4 11 0.042 1e+03 0.3 0.0 21 44 376 399 372 405 0.82 5 11 0.0052 1.3e+02 3.3 0.0 21 46 404 429 392 436 0.83 6 11 0.0075 1.8e+02 2.8 0.0 21 46 432 457 428 463 0.85 7 11 0.003 74 4.0 0.2 22 47 461 486 452 492 0.84 8 11 0.013 3.1e+02 2.0 0.1 21 46 488 513 484 519 0.83 9 11 0.00029 7.1 7.3 0.1 21 47 516 542 512 548 0.86 10 11 0.0051 1.2e+02 3.3 0.0 21 46 544 569 540 576 0.85 11 11 0.0076 1.8e+02 2.7 0.2 11 45 561 596 559 603 0.76
Sequence Information
- Coding Sequence
- ATGTTTAGACGCAGTCTTCGGCAGAAGCCGCGAATAAGTTATTGCGAGCCAGTGGAACCCAATTTGGACgaatatatttTTTGTGAAAAATGCGGCGACTACGTGTATGAGTACTGCTCTATACATGGGCCGCTGCTCGTAATACCAGACGACAAGGTTCCTGCAAACCCCGACGTGCCAGACTACGTGCCGCGCGCTGCACTCACCATCCCGCACGTGTTTCTGCACATACACTACTCCTACATACCAGATGCTGGTTTGGGTGTGTTCTCATCACTGACGCTGCCGTCCGGAGTGCGCTTCGGGCCGTACCGCGGAGAACACACCGATGTCGTCGACTCTTCTTCTTACTGCTGGCAGATATACGACAATAACCGTAAACCGATCCACTGCATCGACGCGGCCGACGCGAACAAATCCAACTGGATGCGCTATGTGAACTGCGCGAGGCACTGGTGCGAACAGAACCTGGTGGCCTATCAGTACCAGGGGGAACTCTATTATAGaacaataaaaataatccctCGCTTCACGGAGCTGCTGGTGTTCTACGGCAGCGAGTTCGCGTGCGAGCTGGACGTGGATCTCAGCTCCTACAACTCTCCCAAGGGATTTGCTCAGAAATacgGTGCACCGGTTGTTAAGAAGCGAAAGTCGAGTGACAACAACAATGCTCAAGAAAAAGAATTTACTGAATTGACCACTGCAAGTAACTCAAAAGTCCTTTCAGTGGCAACCTCAGAAGAATTAATAGTCCATAATGAAAATGCAAATACGGAGATTAAAAAACAGACTAAAATAGGGCCTGCTGACAAAAAAGTAAACACTAAAACAACACTGAAACCTAAACaaAAACATCTAAGGTTCCATGATTTAACTAGAGCATTTGAATGCGAGATTTGTAAGCTAAGGTTTAGTGAAAGTGGTAGTTTAAAAAGACATCTACGTACACATACTGAGGAGAAACCATACCACTGCGAGATATGTGATAAAAGGTTTAGTCAAAGTGGTCATTTAAAAGGACATCTACGTACACATACTGGGGAGAAACCATACCACTGCGAGATATGTGATAAAAGGTTTAGTCAAAGTGGTAATTTAAAAGGACATCTACGTACACATACTGGGGAGAAACCATACCACTGCGAGATATGTGATAAAAGGTTTATTCTAAGTGGTCATTTAAAAGGACATCTACGTACACATACTGGGGAGAAACCATACCACTGCGAGATATGTGATAAAAGGTTTAGTGAAAGTGGTCATTTAAAAGGACATCTACGTACACATACTGGGGAGAAACCATACCACTGCGAGATATGTGATAAAAGGTTTAGTGAAAGTGGTCATTTAAAAGGACATCTACGTACACATACTGGTGACAAGCCATACCACTGCGAGATATGTGATAGAAGGTTTCGTCGAAGTGgtcatttaaattatcatcTACGTACACATactggtgagaaaccataCCACTGCGAGATATGTGATAAAAGCTTTAGTCGAAGTGGTCATTTTAAAACACATCTACGTACACATACTGGGGAGAAACCATACCACTGCGAGATATGTGATAAAAGGTTTAGTCAAAGTACTcatttaaaaacacatttacGTACACATACAGGGGAGAAACCATACCAATGCGAGATATGTGATAAAAGGTTTAGTGAAAGTGGAACTTTAAAAGATCATCTACGTACACATACTGGGGAAAAACCATACCACTGCGAGATATGTGATAGAAAGTTTTGTCATAGTTGTAGTTTCAAAAATCATCTACGTACACATACTGAGGAGAAACCATAG
- Protein Sequence
- MFRRSLRQKPRISYCEPVEPNLDEYIFCEKCGDYVYEYCSIHGPLLVIPDDKVPANPDVPDYVPRAALTIPHVFLHIHYSYIPDAGLGVFSSLTLPSGVRFGPYRGEHTDVVDSSSYCWQIYDNNRKPIHCIDAADANKSNWMRYVNCARHWCEQNLVAYQYQGELYYRTIKIIPRFTELLVFYGSEFACELDVDLSSYNSPKGFAQKYGAPVVKKRKSSDNNNAQEKEFTELTTASNSKVLSVATSEELIVHNENANTEIKKQTKIGPADKKVNTKTTLKPKQKHLRFHDLTRAFECEICKLRFSESGSLKRHLRTHTEEKPYHCEICDKRFSQSGHLKGHLRTHTGEKPYHCEICDKRFSQSGNLKGHLRTHTGEKPYHCEICDKRFILSGHLKGHLRTHTGEKPYHCEICDKRFSESGHLKGHLRTHTGEKPYHCEICDKRFSESGHLKGHLRTHTGDKPYHCEICDRRFRRSGHLNYHLRTHTGEKPYHCEICDKSFSRSGHFKTHLRTHTGEKPYHCEICDKRFSQSTHLKTHLRTHTGEKPYQCEICDKRFSESGTLKDHLRTHTGEKPYHCEICDRKFCHSCSFKNHLRTHTEEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00321781;
- 90% Identity
- iTF_00321781;
- 80% Identity
- iTF_00321781;