Basic Information

Insect: Chloroclystis v-ata
Gene Symbol: -
Assembly: GCA_963691955.1
Location: OY829896.1:1175082-1189396[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.2 14 6.8 0.1 2 23 424 445 423 445 0.91

2 14 0.033 2.2 9.3 0.0 1 23 455 478 455 478 0.94

3 14 0.047 3.3 8.8 4.3 2 23 633 654 632 654 0.95

4 14 0.018 1.2 10.1 1.5 1 23 665 688 665 688 0.92

5 14 0.0002 0.014 16.2 0.7 2 23 695 718 694 718 0.97

6 14 0.066 4.6 8.3 0.4 1 23 724 746 724 746 0.93

7 14 0.0077 0.53 11.3 1.8 1 23 752 774 752 774 0.98

8 14 0.21 15 6.7 0.0 2 20 785 803 785 805 0.90

9 14 0.31 21 6.2 0.1 1 23 883 905 883 905 0.96

10 14 1.8 1.3e+02 3.8 7.2 1 23 912 934 912 934 0.95

11 14 0.0012 0.084 13.8 1.8 1 23 962 985 962 985 0.95

12 14 0.0056 0.39 11.7 1.9 1 23 992 1015 992 1015 0.96

13 14 0.012 0.83 10.7 0.2 2 23 1033 1055 1032 1055 0.96

14 14 0.0032 0.22 12.5 0.2 3 23 1097 1118 1095 1118 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.2	14	6.8	0.1	2	23	424	445	423	445	0.91
2	14	0.033	2.2	9.3	0.0	1	23	455	478	455	478	0.94
3	14	0.047	3.3	8.8	4.3	2	23	633	654	632	654	0.95
4	14	0.018	1.2	10.1	1.5	1	23	665	688	665	688	0.92
5	14	0.0002	0.014	16.2	0.7	2	23	695	718	694	718	0.97
6	14	0.066	4.6	8.3	0.4	1	23	724	746	724	746	0.93
7	14	0.0077	0.53	11.3	1.8	1	23	752	774	752	774	0.98
8	14	0.21	15	6.7	0.0	2	20	785	803	785	805	0.90
9	14	0.31	21	6.2	0.1	1	23	883	905	883	905	0.96
10	14	1.8	1.3e+02	3.8	7.2	1	23	912	934	912	934	0.95
11	14	0.0012	0.084	13.8	1.8	1	23	962	985	962	985	0.95
12	14	0.0056	0.39	11.7	1.9	1	23	992	1015	992	1015	0.96
13	14	0.012	0.83	10.7	0.2	2	23	1033	1055	1032	1055	0.96
14	14	0.0032	0.22	12.5	0.2	3	23	1097	1118	1095	1118	0.94

Sequence Information

Coding Sequence: atgtttTACAGATCCACACTGGGCTATGACATCGACCTATCATTACTGACCAAGAACCCACCTGTAGAAATGACAGAAAACGTCTACCAATTCTTAGTAAACAGTGAACTAAACGAAGAAGCCATGGGCCAAACCTACGATACCTCTATCGATAACAACCAACCCATCGTGCTAGACGATAATCAACTCTACGTCTTAGATGATGGAACTCAGATTAGAGCATCCCAAATACATTTTGACAATGAGGACGCACCAATAGATATATCACTAGAGCAACTGCCTTTCACGAAAATCAATGATGAAGAAGACGCGCTGTCTATCACAGGAGACGTTACTTTCGATGATGTTACGCACAAAATAATTGCTAGTCCAGTACCTACAACAAGTTCAAGTCCTAAACATGGATTTATAAACCATGTACCGTTCAAATTAGTTTGCAACAATACTACAGGCTTTGAGGCTCAATTTACTAAATATCTCGAAGCTAGCAACAAAACCTATGCTACCCTTAGCAATGTTACCAAACAGAACAAGTCTCCTAGAAGTTTAATAAGGGATAACTTCAAAGATAAAGATGAGTTTAGATTCTCTCGAGAGGAGATTTTAAATATGCTAAAAGATTCTCCAGTTACAAGCATACCTTATGAGAATAATGAAAAGAAGCATGTGAGAAAGACAGATCCTACCAAAATGGTTCAAAAACAGAGCACCAAAGCTATTGATATTGAAGGTTTAGTTATCGGCGATGGTGGAAATAAGAATTGCTTTATTTGTGGACGCAACGTCAGCAACGATAAAGTCTACCTATTTGATAAAGAAGATCAGAAAATACACAAATGTCctcctcaaaacaaaatgacgACACAACTAAAAGTTATCTGCGAGAACTGCTTAGCTGTCAACTTTAAACCTTCTAGAATGAAATCTGCCAATCAATTCCTAACATCTGACGAATACTTGGTGATACGGAACAACCAACAGTACATATTTCAGAAGATTAAGAATTTTAAGTTCAGGATTGATACAGTCAGCAAAacaaaggtaaataaaatggaGGAGTTTGTTAAATTTGATATTGGTTCTGATGGGGAGATTGTTACTAACCCAGTCGATGAAGATGTTATGTTGGTTCATGATGGTAGGAAGTATAGTTCAAGTGATGTTGAAGTTATTGAAGAAGTAGATAAGATTATAGATAATCTAGAAGATGCTGATGAAGATGTCAAAGCGTTTTTGGGCAAATATGATTGTGATGAAGTGAACGAGCTGAAATGCAGGTTTTGCGAACGCACATTCGCCTCAGTATCTGAAGTTATAGACCACGGGGAGCTACATAAGCAcgatattgatgatgatgtggtCTATCCATGTCCTTTGTGCGATTTTGgttACGCGACTTTTAAGTGGCTGAGAGGACATTTGTTGGCAGCACACAATAAAAATGGTAACCCTTCTATCGAATCTAAAATAGGTGCTGATTCAATATCTGGGGATGTGAAGAATTTGGCTTGTAATATATCGaacatgcccgACTTAATAATAAAGACAGAGGTGAAGCAAGAGGCGTTAAGTAGTGATGATGAGATTTGGATCGTCCAAACGGGCGACGACGAGGCTCATGGCCCTTTGAAAGATATACTACAAGCTGCTAAGGTACAGTTGACCCTTTtcccacagcaacatctagccccgtgCAATACGTACTCATCACCCGAGTCTCTATCATCCCACAAATGTCTCGGAAAGAAACGTCAATGTGATACTGTTATGATACCCACCGAAGAAGACTTTATGCGAAGGGCTCAAGGAAAACCAAGAATCATCACTTCAACTAAGGCAGCAGAGTTGTTAGAGAGACGcaagttatctaaaaactTGTCTGATGCGCAAATCGTGACGTGCCACAATTGTAACCAGTCGTTTACGTCTAAAGTGCGCCTGAAATTTCACATGCAATTCCACGACATAACCTCAATGCTGTCGGACGGCCAGTACAAATGCACGCAGTGCGGCGACGTGTTCGCCAGCGAGACGCAGCTGTTCGACCACGTGCACTTCACGCACGAGAAGATACGCCGCTGGCAGTGCCCCGTGCAGGACTGCCAGAAGACGTTCTACTTGAGAGCGACTTTAACGAAGCACAGTCGCACGCACACTGATACACGTCGCTATGTGTGCGTCACTTGCGGCAAACGGTTCCTCGACAAACAGACGCTGGACGAACACAGTGTTACTCATTTACAGataaaacCATACCAATGCCACATCTGCCTGAAGCAACTAACGCGCGTGTCACGACTTCGCATGCACGTGAGAGCTCATGAAGAGGAGTTGTCTCCGACCCTGGTGCCGGTCTGCCGGGTCTGTCGCCGCGCCTTCAGGGATGCCTCCGAAGCTCAGGATCATGCGGAGAAATCCTTGGAATGCCTCGGAGCAATCGCTGGAGAAGTAAAAACTGAAGAAGAAACCGCGGTTCAGCTCTCCCCGACCAGTGGCATTGTGCGGCAGACCATTCAAGTTATTGAGTGTCCGTCCCCCAAGCCGCGCGTGTACCGCCAGGTCGCGTCGCCGGTCGCGGCGCCGCTTCTCTCCTCGCTGTCCGGGGAGGCTCTATCGCTGATACGGGTGGTTGAGATCGAGAAGGCTTTTCGATGCGAGTATTGTGAAGAtGTTTTCTACATAGAAGAGGGTTTGAACGATCACAGAGCGATACATAAGGGCGTGAAAAACCCGTTTACTTGCCATATATGCAAAGTCAGCTTTGCCACATATTCCAGGTGTACAACGCACAAGACGACGCACGGTTTTTACAAGCGCCCGGCCAGTGGAAACGAGCACGGCTCTAATATCGTGGGCTACGGGGACTTCCCCACCGTCAAACATTTCTTATGCGAGGATTGCGGTAGGTCGTATCTCCACTGGACGTACCTTCAAGTGCACAGACGAATGAAACATCCCAATGAGAACTACCCTCATAATTGTAACCAGTGTGAAATGACCTTTCCTAACAGTTGGAGTTTGGCGTACCATAAGAAGAAACTACACAGCAAAACCGCTCAGGAAGAACCGCCAAAATCTACAGTTAATTACAGaatTCCATGTAGAGATTGTGAGGAGGTGTTGCCAAACAAAACTGCGCTTTATAAGCATAGGAAGAAAGAACATACTGGTGTGTCCATGACTACTAACACTAGTGTAGCCAGCGGCTTTCCTTGTAGCAGTCAGCTTGAAAgAGCGCCTCCAGTGGCGATGCTGCGTTCGGCGCAGTACAGCGCGCTGGCCTGGGCGTGCGCGCGCTGCCCGCGCCGCTTCCGCATCCGCTCCTCCCTGCGCGCGCACGCCCGCCTGCAGCACCCGCAGCACGTCGCCGTCATAGAGGTAGTGTACATCCGCTCCTCCCTGCGCGCGCACGCCCGCCTGCAGCACCCGCAGCACGTCGCCGTCATAGAGGTAGTGTACATCCGCTCCTCCCTGCGCGCGCACGCATAG
Protein Sequence: MFYRSTLGYDIDLSLLTKNPPVEMTENVYQFLVNSELNEEAMGQTYDTSIDNNQPIVLDDNQLYVLDDGTQIRASQIHFDNEDAPIDISLEQLPFTKINDEEDALSITGDVTFDDVTHKIIASPVPTTSSSPKHGFINHVPFKLVCNNTTGFEAQFTKYLEASNKTYATLSNVTKQNKSPRSLIRDNFKDKDEFRFSREEILNMLKDSPVTSIPYENNEKKHVRKTDPTKMVQKQSTKAIDIEGLVIGDGGNKNCFICGRNVSNDKVYLFDKEDQKIHKCPPQNKMTTQLKVICENCLAVNFKPSRMKSANQFLTSDEYLVIRNNQQYIFQKIKNFKFRIDTVSKTKVNKMEEFVKFDIGSDGEIVTNPVDEDVMLVHDGRKYSSSDVEVIEEVDKIIDNLEDADEDVKAFLGKYDCDEVNELKCRFCERTFASVSEVIDHGELHKHDIDDDVVYPCPLCDFGYATFKWLRGHLLAAHNKNGNPSIESKIGADSISGDVKNLACNISNMPDLIIKTEVKQEALSSDDEIWIVQTGDDEAHGPLKDILQAAKVQLTLFPQQHLAPCNTYSSPESLSSHKCLGKKRQCDTVMIPTEEDFMRRAQGKPRIITSTKAAELLERRKLSKNLSDAQIVTCHNCNQSFTSKVRLKFHMQFHDITSMLSDGQYKCTQCGDVFASETQLFDHVHFTHEKIRRWQCPVQDCQKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHSVTHLQIKPYQCHICLKQLTRVSRLRMHVRAHEEELSPTLVPVCRVCRRAFRDASEAQDHAEKSLECLGAIAGEVKTEEETAVQLSPTSGIVRQTIQVIECPSPKPRVYRQVASPVAAPLLSSLSGEALSLIRVVEIEKAFRCEYCEDVFYIEEGLNDHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPASGNEHGSNIVGYGDFPTVKHFLCEDCGRSYLHWTYLQVHRRMKHPNENYPHNCNQCEMTFPNSWSLAYHKKKLHSKTAQEEPPKSTVNYRIPCRDCEEVLPNKTALYKHRKKEHTGVSMTTNTSVASGFPCSSQLERAPPVAMLRSAQYSALAWACARCPRRFRIRSSLRAHARLQHPQHVAVIEVVYIRSSLRAHARLQHPQHVAVIEVVYIRSSLRAHA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00699604; iTF_00697735; iTF_00700467; iTF_00706459; iTF_00703455;
90% Identity: -
80% Identity: -