Cv-a016801.3
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- RHOBTB1
- Assembly
- GCA_963691955.1
- Location
- OY829906.1:15547857-15560210[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1.9e-07 6e-05 23.6 0.2 4 44 257 296 254 313 0.87 2 6 0.1 32 5.1 0.2 25 44 327 346 321 363 0.86 3 6 0.1 32 5.1 0.2 25 44 377 396 371 413 0.86 4 6 0.09 29 5.3 0.1 25 44 427 446 421 468 0.84 5 6 0.00023 0.074 13.6 0.2 47 106 544 610 535 614 0.70 6 6 8.2e-18 2.6e-15 56.9 0.1 7 106 639 737 634 741 0.93
Sequence Information
- Coding Sequence
- ATGGACAACGAACAGCCTCATCAGGAGTTGGTGAAGTGTGTGGTGGTCGGAGACACGGCCGTTGGCAAGACTCGGCTCATCTGTGCACGAGCATGCAACAAGCATGTGTCACTCTCTCAACTCATGACAACTCATGTACCCACGGTCTGGGCTATTGATCAGTATAGGATTTACAAAGATGTGTTAGAAAGATCTTGGGAGGTGGTGGACGGAGTTAATGTGTCACTCCGACTCTGGGATACATTTGGAGACCATGAGAAAGACAGAAGATTTGCATATGGGAGATCTGATGTGGTGCTTTTATGTTTCTCCATAACCAATccaatatctctaagaaactGTGGCGCTATGTGGTACCCGGAAATAAGACGTTTCTGCCCAAACACTCCAATCCTGTTAGTTGGTTGCAAGAATGACCTTCGTTACATGTACAGAGATGAAACCTATCTCAACTACTGTAAAGATCGCAGTCCCTTCATAagGGCTCCTAGAAAAAGTGACCTGGTAATGCCAGACCAGGGCCGCGCGCTGGCGCATGAGTTCGGCATGTACTACTACGAGACGTCCGTGTTCACCTACTACGGCGTCAACGAGGTCTTTGAGAGCGCTATACGGGCCGCGCTTATAGcGCGACGTCAGCAGCGATTTTGGATGACGAACCTTAAACGTGTCCAGAGGCCTTTATTAcaggAACCTTTTCGACCTCCAAGACCCATCGAACCGGAAGTGACTACGGTGAACAGCGTCTACTTTGAAAACATGACTTCATTACTACATCATCAgTATTTCTCTGACATGGTGATAATCTGCGGCGCGAAGGGTTTCCCGGTGCACCGCTGCATGCTGGCGGCGGCGTGCGAGGCCTTCCACCGCCTGCTCACCACCGACTGCGCCAGCCTCGCCGCAGACCTGGCCCGCAGCTCCAGCGAGAGCAGCATGCGAGAGCAGCATGGTAACACTAAGATAGCACTCATTTGTATGCACCGCTGCATGCTGGCGGCGGCGTGCGAGGCCTTCCACCGCCTGCTCACCACCGACTGCGCCAGCCTCGCCGCAGACCTGGCCCGCAGCTCCAGCGAGAGCAGCATGCGAGAGCAGCATGGTAACACTAAGATAGCACTCATTTGTATGCACCGCTGCATGCTGGCGGCGGCGTGCGAGGCCTTCCACCGCCTGCTCACCACCGACTGCGCCAGCCTCGCCGCAGACCTGGCCCGCAGCTCCAGCGAGAGCAGCATGCGAGAGCAGCATGGTAACACTAAGATAGCACTCATTTGTATGCACCGCTGCATGCTGGCGGCGGCGTGCGAGGCCTTCCACCGCCTGCTCACCACCGACTGCGCCAGCCTCGCCGCAGACTTGGCCAGGAGCTCCAGCGAGAGCAGCATGGTGAGCAGTATGGGAGAAGCGACAGCGGGTGAATTCAACGAAGACACAGAATACTTGATCAGCAAAGAACTAGCCAAGCAAATGAGagtATGGGATCACATAAAGCGACGATCGTCCTGCCAAATTCTACCAATCAGTGACAGTTGTAAGAGGCCGCTGGAAATCTACAGGGAGGTGAATCATCCCGCTATCAACTCTATTAGAGTTGTCAAGTGCGACAAGATCCAACACGCGACATCCCAAACACAAACAATAGTGACGATGAGTAAGCTGATATCGCAGGCCGTGATGCAAGAGATGATCAACTTCATATACACGGGTAATATCGACCTCACGTCGTTCAAACAGAAGTCTGCTGCTATTGGATTATTACtggAGATAAGACAAGCGGCCGAACTATTGGGCTTTGTGGAGCTGGTGAAACTCACTCAGTTCATCGTCGACCAACATCTACTGTTTGATAAAGGATTTATGCTGCAATTTCATTCTCCGATACCACAAAGACTGCGTGACCTCTACGTGGACAGCAATCTGTTTGCGGACGTGACCTTTGACCTGGACGACGGCATCCACCTCGCGCACCGCGCCGTGCTGATGGCGCGGTGCGACCCCATGAAGGCTATGTTCCAGGGACACTTCAGGGAGAGCACTTCTAGAGTGatatcCTTCCCCGGTGTGAAAATGTACGCGTTCCACATTCTCCTCTGCTACATGTACAGCGACAAGATCCCGGCCGTGGAGCCGGCGCGCTGCCTCGAGCTGCTGGAGCTGGCCAACCGGCTCTGCATGACGCGCCTCGTGTCGCTCGTCGAGGACGAGGTGCTGGACCGATTACAGCGGCAGGACCGagTTTGTGGCGATGATGATCAAGTTGTCGAAATAGCTTTGACGCTGTTGGAACCTCTGAAGCTTCACAACGCACACAACCTAGCGGACTGGTGCCTGTGGCGACTGTGCGGCGCCTACGACCGCGCCTGTCGCGCGAAGCATCTCAGCCCCGCCACTAGGGACTACCTCTCCGACAACCGCTGGCCGCCTGTctgGTATGTAAAAGAGTTCGACTACTACCAGAAATGTTTGACGGAGCAGAACAAAGACCTGAAGGAACTAAGACCACAGACCTCTCTACCAAACCAGCAGACTGGATGCTTATGTTTCACTAGTGAGTATTATAAACTTGATGTAGTTTTATCGACTTTTatgagagccgtgttggctaagtga
- Protein Sequence
- MDNEQPHQELVKCVVVGDTAVGKTRLICARACNKHVSLSQLMTTHVPTVWAIDQYRIYKDVLERSWEVVDGVNVSLRLWDTFGDHEKDRRFAYGRSDVVLLCFSITNPISLRNCGAMWYPEIRRFCPNTPILLVGCKNDLRYMYRDETYLNYCKDRSPFIRAPRKSDLVMPDQGRALAHEFGMYYYETSVFTYYGVNEVFESAIRAALIARRQQRFWMTNLKRVQRPLLQEPFRPPRPIEPEVTTVNSVYFENMTSLLHHQYFSDMVIICGAKGFPVHRCMLAAACEAFHRLLTTDCASLAADLARSSSESSMREQHGNTKIALICMHRCMLAAACEAFHRLLTTDCASLAADLARSSSESSMREQHGNTKIALICMHRCMLAAACEAFHRLLTTDCASLAADLARSSSESSMREQHGNTKIALICMHRCMLAAACEAFHRLLTTDCASLAADLARSSSESSMVSSMGEATAGEFNEDTEYLISKELAKQMRVWDHIKRRSSCQILPISDSCKRPLEIYREVNHPAINSIRVVKCDKIQHATSQTQTIVTMSKLISQAVMQEMINFIYTGNIDLTSFKQKSAAIGLLLEIRQAAELLGFVELVKLTQFIVDQHLLFDKGFMLQFHSPIPQRLRDLYVDSNLFADVTFDLDDGIHLAHRAVLMARCDPMKAMFQGHFRESTSRVISFPGVKMYAFHILLCYMYSDKIPAVEPARCLELLELANRLCMTRLVSLVEDEVLDRLQRQDRVCGDDDQVVEIALTLLEPLKLHNAHNLADWCLWRLCGAYDRACRAKHLSPATRDYLSDNRWPPVWYVKEFDYYQKCLTEQNKDLKELRPQTSLPNQQTGCLCFTSEYYKLDVVLSTFMRAVLAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -