Cv-a012541.2
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829903.1:13385712-13409111[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4.9e-11 1.7e-07 31.2 0.1 8 50 28 72 23 80 0.88 2 21 4.6e-11 1.6e-07 31.3 0.1 8 50 84 128 78 138 0.88 3 21 4.5e-11 1.6e-07 31.3 0.1 8 50 140 184 133 194 0.88 4 21 4.6e-11 1.6e-07 31.3 0.1 8 50 196 240 189 250 0.88 5 21 4.8e-11 1.7e-07 31.2 0.1 8 50 252 296 247 305 0.88 6 21 4.9e-11 1.7e-07 31.2 0.1 8 50 308 352 303 360 0.88 7 21 5.1e-11 1.8e-07 31.1 0.1 8 50 364 408 358 413 0.88 8 21 4.8e-11 1.7e-07 31.2 0.1 8 50 420 464 414 472 0.88 9 21 4.9e-11 1.7e-07 31.2 0.1 8 50 476 520 470 527 0.88 10 21 4.8e-11 1.7e-07 31.2 0.1 8 50 532 576 526 584 0.88 11 21 4.9e-11 1.7e-07 31.2 0.1 8 50 588 632 583 640 0.88 12 21 4.9e-11 1.7e-07 31.2 0.1 8 50 644 688 639 696 0.88 13 21 4.6e-11 1.6e-07 31.3 0.1 8 50 700 744 694 754 0.88 14 21 4.8e-11 1.7e-07 31.2 0.1 8 50 756 800 750 808 0.88 15 21 4.7e-11 1.6e-07 31.2 0.1 8 50 812 856 805 864 0.88 16 21 4.7e-11 1.6e-07 31.2 0.1 8 50 868 912 861 920 0.88 17 21 4.8e-11 1.6e-07 31.2 0.1 8 50 924 968 918 976 0.88 18 21 4.9e-11 1.7e-07 31.2 0.1 8 50 980 1024 975 1032 0.88 19 21 4.9e-11 1.7e-07 31.2 0.1 8 50 1036 1080 1031 1088 0.88 20 21 4.8e-11 1.7e-07 31.2 0.1 8 50 1092 1136 1087 1145 0.88 21 21 9.7e-13 3.3e-09 36.6 0.0 8 70 1148 1208 1142 1212 0.88
Sequence Information
- Coding Sequence
- ATGCATCTTCAACCTTTTCCTTCAGCGTCGCCGGCGCAGCGCGGCCGTAAGAACACGAGTGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGCTGGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGCTGGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGCTGGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGCTGGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGCTGGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGCTGGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGCTGGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGTTAGACGCGCACTCGCGCCGCAACGCCGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGGTATGTAAGAACACGAGCGAGATGTCCTCTCCGCTGTACCGCGTGCCGATCGAGCGCGGCTGGAAGAGAGAGCTGGTGTACCGCGCCGCGCTGGACGCGCACTCGCGCCGCAACGCAGACATATACTACTACATGCCGAGTGGGAAGAAACTGCGCTCTATGCGAGAGATTGGCGAGCACTTAGGAGGCACGGGTCTGACCATAGAGAACTTCACTTTCTTCAAGGAACCGCTGGGTCTCGATGATCCTGAGAAGGAAATCATCAGAGACGCGAAGCTAGTGGGTGGATACCGCCGCATAGAATCGCCTGTAGCATCTCCAGCCCCAACGGTGGATGGCAAGCGCACTCCCAAACCTAAAGGACCCAAGGGGGCCAGTCCAGAACCTTCCAGGCCTAAGTCTCCTGCTTCTAAACTAAAGGTGAAATCAGTCGGTGCCCGCATCTCTACCCCGCCGGTGCCGGCCAAGAAGAAGGCCGCCCcctcgcccgcgcccgcgtcccccgcgccgcccgccccctCCACACCCGACAACAACAACACGGCTGCCTGGAAGAAACCCAGGCCGCCAGAAGcggcccccgcgccccccacCGCGGCCCCCGCGCCTCCCACCGTGCCTCCGCTGGTCATCCATGTCCCGAAGAACTCGCCGCCGCGGTTGGTGACCCCTCCGAGGTCGGTGACCCCGCCACGGTCGGTGACCCCGCCGAGGGCGGTGACCCCGCCGAGAGAGGTCACGCCGGCGCCGGTGGCTAAGCCGCAGTTGACGTCGCCGGACATACAGTCCCCGCGTCGCCTGATCCAGCCGTGCTCGATGTCGTGCGGCGCGGGCGTGCCCTCGCTGTCGTGCAGCGCCTGCCTGTGCCTCTACCACGCGGCATGCGCCGGCCTCACACATGTACCCGCTGGCAATTTCCTCTGTAAGAATTGCCGCAAGTCTCCTATCTCGGGGCGCTCGCCGCCCGCGCTATGCGCCGCCGGCGGGGAGCGGGCCGGcgtggcggcgccgcgcgccggcGTGGCCGCGCCGCAACCGCGCCGTCCCACGCCGGCCACCAACACGCACAAGCCCAACGATAAGCGTGTGCTGCTAAGGATGAAGGTATCTGGCGGGTCTGACGGGTCCCGCGTGTGGGCGGTGGCGCCGCCGGCCCGCCCGTCGCGCGGCTCGCTGCCACAGTCGCTGGCGCTCATCAACGGGCGCCGCTTCATCGTGGtgccgcgccccgcgcccatGCCCAACCAGCCCCAAGCGGCCAATGATGACAGGAGGAAGACTCGTGTGTCTaacggcgccgccgcgccgccaaTGGCCGCCGTGCCGCCGCGCCGGCGCGGACGACCCGCCAAGGCAGAGGCAAAAGACGACATCGACTATTTCACCTCCTTCTACGAGAAGGCCAAGGAGAGCAATGTTATTGTGCAGATATTCCAGTTCGTCGGCATGCGCGACCTGGCGCACTGCGGCCGCGTGTGCCGCGCCTGGCGCGAGATGGCCGCCACGCCCGCGCTCTGGCGGCACGTACGGATGAAGAACTCACAAGTGAATGACTGGGGAGGGTTATGCACCGCACTCAAACGTCACGGTACAAAATGGCTGGATCTGCGCAAGATGCTGCTTCCACAGAACGACATCGCCTTTTGGGACCAATTCGCAACGCATATCGGGAAAGTAGACACACTGGAAAGGTTAGAGATGTGCCGCTGCCCCGCGCGCGCCGTGGAGGCGGCCAGCGGCGCGCTGCCGCTGCTGCGCTCGCTGTCCGCGCTCGCCATCAAGGACGCGGCGCTGGACCCCGCGCCCCTCGCCGCCCCCTCCCAGCTCGCGGAGCTGCGCCTCAAGTCCATGCAGGGGCTCGCGCTCACCGCCGACCTCACGCCCCTCGCGCGCCTCCAGCACCTGCAGCACCTGTCGCTCACATCCATCAAGGAGCTGGGGTGGCGAGCGTGCGACGTGGTCGGCGAGCTGCCGCTGCTGGAGTCGCTGGAGCTGGGCGAGTGCACGTTCCGCGAGGAGTTCGGGTCCGTACTGGCGCGCCTCGGCCGCCTGCGCCGCCTGCGCCTGGAGCGCGGCACCGCGCactgcgccgcgcccgcgctgctGCGCGCGCTCGCCGGCCTGCCCAGCCTCACGCGCCTCGAGCTCGTCAACATCGACGTCAGGGTTGGTTTCGACGACGCGCTAGCGGAATGCAAAAATATCCAGAGACTTCtcattatacctacctacgtctCACAATCAGCTACCACGAATAAACAGGTGCTCAGCGGCGTCCTCCGGCTAAAAGAGACCCTGACCCATCTAATGTGGGGAGTGACCATAGAACTGCTGCGAGTGACGGAGCTGTTCATAGACCAGTGctcggcgggcggcggcggacAGGCCAAGCGCGAGCTGGGCGAGTGCATCCCCGTGCTGAAGCCCGTGCCCGGCTGCAGGCTGCCCATGGACCACCAGCTGGTGGCCGGACCCCCGCAGGTGGAGATCCTGCCACTGCCGACCCTGCAGCGCCTGCTGTCGGCGCAGTTGCCGAACACGAAGCTCAAACTGCTGCGCATTCCCTTCCACGCCACCTGGCGGCAGAGCCTCGCTGACTTCCAGTAG
- Protein Sequence
- MHLQPFPSASPAQRGRKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREVCKNTSEMSSPLYRVPIERGWKRELVYRAALDAHSRRNADIYYYMPSGKKLRSMREIGEHLGGTGLTIENFTFFKEPLGLDDPEKEIIRDAKLVGGYRRIESPVASPAPTVDGKRTPKPKGPKGASPEPSRPKSPASKLKVKSVGARISTPPVPAKKKAAPSPAPASPAPPAPSTPDNNNTAAWKKPRPPEAAPAPPTAAPAPPTVPPLVIHVPKNSPPRLVTPPRSVTPPRSVTPPRAVTPPREVTPAPVAKPQLTSPDIQSPRRLIQPCSMSCGAGVPSLSCSACLCLYHAACAGLTHVPAGNFLCKNCRKSPISGRSPPALCAAGGERAGVAAPRAGVAAPQPRRPTPATNTHKPNDKRVLLRMKVSGGSDGSRVWAVAPPARPSRGSLPQSLALINGRRFIVVPRPAPMPNQPQAANDDRRKTRVSNGAAAPPMAAVPPRRRGRPAKAEAKDDIDYFTSFYEKAKESNVIVQIFQFVGMRDLAHCGRVCRAWREMAATPALWRHVRMKNSQVNDWGGLCTALKRHGTKWLDLRKMLLPQNDIAFWDQFATHIGKVDTLERLEMCRCPARAVEAASGALPLLRSLSALAIKDAALDPAPLAAPSQLAELRLKSMQGLALTADLTPLARLQHLQHLSLTSIKELGWRACDVVGELPLLESLELGECTFREEFGSVLARLGRLRRLRLERGTAHCAAPALLRALAGLPSLTRLELVNIDVRVGFDDALAECKNIQRLLIIPTYVSQSATTNKQVLSGVLRLKETLTHLMWGVTIELLRVTELFIDQCSAGGGGQAKRELGECIPVLKPVPGCRLPMDHQLVAGPPQVEILPLPTLQRLLSAQLPNTKLKLLRIPFHATWRQSLADFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -