Cv-a004360.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963691955.1
- Location
- OY829897.1:19511533-19523921[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-70 6.9e-66 223.0 22.6 1 271 119 379 119 399 0.90 2 2 0.92 2.2e+04 -5.2 9.9 130 164 429 463 406 474 0.44
Sequence Information
- Coding Sequence
- ATGGGATATCGCTCAGAAATGGCTACTCCAGATCACAGCGACGAGGAGAGTGGAGATGCCTTTACTGACGGAGATTTCGAGGACTCAGAAGATGAGACAACTGTCATTGAAACCGATGGACCATCAAATATTCCTATCAATGAAACTGTCAATGAAGGTGTTCAACAGATATTAAACAATGGAGATCTACAAACAAATGGTTTTATAGAGCCCATAGAGGAGACAAAAACTAACGGACTGATACATAGCGGAGCCTCAAGTGACGTGGAAAACGGAATAACAGGCATAAGGCGGGATTCGCACGGCGATCAAAACCCTTCGATTGTTGGGATTCTTGGAGATCAACACGGTCAAGCAGAACAGCGGCTAGCGGCGCGGAGGGCGGCTCGTGCCGAAGCCCGGGAGATTCGCATGCGGGAATTGGAGCGCCAGCAGAGAGAGCAAGAGGACCATGCCGATAAAGCCTATGACATGTATGCAGAGACTGTGGGGAGGCGCGCCCCGCGGCTGGCGGCGCTCAGCCCCGCGGCCCCCCTCACGCCGCGCCGCACCTCGGAGGACTCCGCGCCGGACGACACATACAGCGTCAAGGACTTGCGGCACGAGTTAAAAGAATTAGAAGAGAAGTTCCGCAAGGCGATGATTCTGAACGCGCAGCTGGACAACGACAAGGCCTCGCTGGGCTACCAGCTGGAGCTGCTCAAGGACCGCATCGACGAGCTGCAGGAGGAGTACGCGCAGTTGCAGCGTGAACACAAGGAGAAATGTTCTGAGCACACGCGGTTAAAGCGCGCGCACGTGTGCGTGGAGCGCGAGCTGGCGCAGGCGCGGGACGCCGTGCGCGCGCGCgaggccgccgccgccgccgcgggGTTCGTGTTCTGCgaggcggcggccggcgccaCCGCGGCCGGCTTCGGCGAGGTGCCGCCGCTGGCGCTGCTCTCGCAACAGCTCGACCAGATGCTGGACGGCGAGGAGACACTAGACGTGCGGTTGCAGACCCTAGTGAGCAGTAAGCAGGCCTTAGAAGCCGAGGTTCGCAAGCTGAAGCTGACTCTGAACGAGGAGCGCGCCGCCAAGCAGAACGGCGTCGCGTCCCACCACGTCGAGGACTACGAGACCGAGCTGGAGAGCCTCCGCAAGGTGGCGCTGGAGGCGaaggcgcgggcggcgcgcgcggaggcggaggcggcgctgcaggcggcggcgggcgcgcggctCGAGGCGCAGGTGCAGCGGCTGCGGCAGCGGCAGGGCGACCACGACGACCTGGAGGAGCAGCTCAAACACGAGCGACGCAAGCTGCAGCGAGAGGCGCGAGAAGCCCTGAACCGCGTGGAAGAGTTAGAGACGGAGAACAGCCACCTCACGAAGCGCCTCGACAAGCTGAAGAACGCCAAGTCCGCGCTGCTTAAGGACCTGTGA
- Protein Sequence
- MGYRSEMATPDHSDEESGDAFTDGDFEDSEDETTVIETDGPSNIPINETVNEGVQQILNNGDLQTNGFIEPIEETKTNGLIHSGASSDVENGITGIRRDSHGDQNPSIVGILGDQHGQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAPRLAALSPAAPLTPRRTSEDSAPDDTYSVKDLRHELKELEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELQEEYAQLQREHKEKCSEHTRLKRAHVCVERELAQARDAVRAREAAAAAAGFVFCEAAAGATAAGFGEVPPLALLSQQLDQMLDGEETLDVRLQTLVSSKQALEAEVRKLKLTLNEERAAKQNGVASHHVEDYETELESLRKVALEAKARAARAEAEAALQAAAGARLEAQVQRLRQRQGDHDDLEEQLKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -