Cv-a009916.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- retn
- Assembly
- GCA_963691955.1
- Location
- OY829901.1:15393656-15404597[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-19 2.9e-16 60.0 0.0 17 89 6 76 4 76 0.95 2 2 3.9 9.5e+03 -2.5 0.0 25 38 207 220 168 223 0.70
Sequence Information
- Coding Sequence
- ATGTCCCTTGTTCCAGGAACCCCAATAAACCGGCTGCCTATAATGGCCAAGTCCGTGTTGGACCTGTACGAGCTGTACAACCTTGTGATCGCGCGCGGCGGGCTCGTGGAGGTCATCAACAAGAAACTGTGGCAGGAGATCATCAAGGGGCTCCGGCTGCCGTCTTCCATCACGTCTGCGGCCTTCACTCTACGCACACAATACATGAAGTACCTGTACGACTACGAGTGCGAGAAGAAGAACCTGTCGACTCGCAGCGAGCTGGACGCGGCCATCGAGGGCAACAAGCGCGAGGGACGCCGCGCCTCGGGACAGTACGACGCGCAAGCCGCGCTCGGCATGTCGCCACTGAGCCGCGGGGTGCCTGCCTCGCTCGCACAGCTGTCCCAGCACATGCAGCCCCTCTCGCTCTCTCTCGGCGGGGGGGTGCCGCGCCTGCCTCCCCTCCCGCCGCACGCCCCGCACATCTCTCAACACGACATCGAGTATCGAGTGCGGGAGTACATGAAGATGATACAGACGCAGAGGGAGTTGATGAGGAATGGTTCAGAATCTCCCCCGAGCGCAGCCAACGGCCCCACCCCGATGATGTCCCCGCGCGACACGGCCGCTCTGAGCGCCATCGACGTGTCGCGCCTCACGCTCTGGTCGCtctacaacaacaacaacaacaatagcCCCGCGCCAGACCTGGAGCCACAACGCGAGGCCCTCAACCTCAGCGAGAGCCCGAACTCCAGCATAAAGCGCGAGGCGTGCCGctcccccccgccccccgccaAACGCCGCACCCCCCTCCCGCCGTCCCCGCGGCTGCCCTCCCCCCCGCGGCCCTGCGCGCCCCCCGCGGTCAACGGGGGCAATAATGGAGCTGCTTTTAAGATTACTACTAGAGgtgaCGCAACCACAGGAGATCAACAACTCGTCGTCTCGATAGAACTGAACGGCGTCACATACGAAGGCGTTCTCTTCCCATCACAAAACGGCAACGGACAAAATGGTCACAGGCAAATGATTTCCTAA
- Protein Sequence
- MSLVPGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALGMSPLSRGVPASLAQLSQHMQPLSLSLGGGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQTQRELMRNGSESPPSAANGPTPMMSPRDTAALSAIDVSRLTLWSLYNNNNNNSPAPDLEPQREALNLSESPNSSIKREACRSPPPPAKRRTPLPPSPRLPSPPRPCAPPAVNGGNNGAAFKITTRGDATTGDQQLVVSIELNGVTYEGVLFPSQNGNGQNGHRQMIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00632547;
- 90% Identity
- iTF_00638435;
- 80% Identity
- -