Cv-a006199.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- swm
- Assembly
- GCA_963691955.1
- Location
- OY829899.1:3130789-3153113[-]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.074 3.6e+02 1.7 0.0 7 30 541 564 537 572 0.87 2 20 0.074 3.6e+02 1.7 0.0 7 30 579 602 575 610 0.87 3 20 0.074 3.6e+02 1.7 0.0 7 30 617 640 613 648 0.87 4 20 0.074 3.6e+02 1.7 0.0 7 30 655 678 651 686 0.87 5 20 0.074 3.6e+02 1.7 0.0 7 30 693 716 689 724 0.87 6 20 0.074 3.6e+02 1.7 0.0 7 30 731 754 727 762 0.87 7 20 0.074 3.6e+02 1.7 0.0 7 30 769 792 765 800 0.87 8 20 0.074 3.6e+02 1.7 0.0 7 30 807 830 803 838 0.87 9 20 0.074 3.6e+02 1.7 0.0 7 30 845 868 841 876 0.87 10 20 0.074 3.6e+02 1.7 0.0 7 30 883 906 879 914 0.87 11 20 0.074 3.6e+02 1.7 0.0 7 30 921 944 917 952 0.87 12 20 0.074 3.6e+02 1.7 0.0 7 30 959 982 955 990 0.87 13 20 0.074 3.6e+02 1.7 0.0 7 30 997 1020 993 1028 0.87 14 20 0.074 3.6e+02 1.7 0.0 7 30 1035 1058 1031 1066 0.87 15 20 0.074 3.6e+02 1.7 0.0 7 30 1073 1096 1069 1104 0.87 16 20 0.074 3.6e+02 1.7 0.0 7 30 1111 1134 1107 1142 0.87 17 20 0.074 3.6e+02 1.7 0.0 7 30 1149 1172 1145 1180 0.87 18 20 0.074 3.6e+02 1.7 0.0 7 30 1187 1210 1183 1218 0.87 19 20 0.072 3.5e+02 1.8 0.0 7 30 1225 1248 1221 1257 0.87 20 20 1.1 5.6e+03 -2.1 0.1 7 28 1263 1284 1259 1284 0.82
Sequence Information
- Coding Sequence
- atgaacatggataagacgaaagtcatgtccaatgttcatgtagagccttcccctgctatggttgagaactcggctcttgaagttgttgacgcATGTGATGCCGACCCGGCCGCGTTGGCTAAATACGTTTACGCGCTCGTCAAGAAGGAGAAACCCATTACTGAGCTTAGAGATGTCATGGTGGATCAGCTTGACGTTTTCCTACAGCATGAAACTAAACCCTTTGTACATATGCTGTTCAAATCACTGGAGAGCAACGAGTACCTGAAGTCTAAAGAGGGGGTGGAGGATAGCGTGGAGCCCACCCCCGCCCCCCTACCAGAACCGGAACCGGAAGTTGAGAAGCCACCCATTGAGAACTTAgagaatcatgCGTCCAACGGAGCAGTGTCCCCcgtccgcgccgcgccgccgccgcgccgcgtcgtggtgccgcgcgcgccgcccgccaaGCGCGCCGCGCACATACACGAGCAAACACTAGTCAAGGTGCTGCCCTTAACAGAACTCCTCGAGGAACCATTAGACCAACCTCCTCGAAGAAGAGACAGACGAAACGATCCgATGCGAGACAAGGACGACCGTAGGCGGCGCCGGTCGCGCTCGGCGGATCGACGCCCGCGGCCCAGGAGGGACCACGACCGACGACATGAACCTAGACGTTTATCATCTCGGTCGCCGTCACCGCGTCGCTATAGAAACCGCAGCCCGCCACCCATAGACAGGCAGCCTAGTCGCTCGAGatcaaGATCACCAATGCGAGACAGAGATATGGATAGAGAAAGAGACAGACTACGCGAGATGGAGCGAGAGAGAATGTCGCGAGACAGAGAGCATAGAGAGAGGTTGTCTCGCTCTAGAGAGAGGGAACGGTCGCGCGATCGGTCGCGCGGATCTTCGCCGCGCGAGCCGCGGATGGAGATCAACGATGCTTTCAAACGGAGGTGTCGCGATTTTGATGAGAAAGGTTACTGCATGCGCGGCGACCTGTGCCAGTGGGACCACGGCCTGGACCCCGTGGTGCTGGAGGACGCGGCGCTCTCCTCCGTGCTGACCCTGCCGCGCGCCGTGCCCGAGTACAACCCGCTACTGCCCGACATCTGGATGGCCGCGCCCTTCCCCCCGCCCTACCCGCACCACCCGCATCCGCACCCGCCCAGGGAGCTCATACCTATACCGAGGATCCGtcacgccgcgccgccgcccgccccgCTGGGCGCGCTGCCGCGACATCCGCATCCGCATCCGCACCCACACCCGCATCCGCAGCAGAAGAAGAACTTTGACTATAACCGCATCGGCACGCGGCCCCCACTACCGAACGTATCAGCCAATTGTTCTCTAGAAGTGAAGAAAGTCCCTCGCGGCATGAACGACATCACACATCTGAACAACCACTTCAGCAAGTTTGGCAAGATTGTCAACATACAGGTTTGCTTCGAGAACGACCCGGAGGCGGCGCTTATAACGTTCTCGAACCCGACGGAGGCCAACGTCGCCTACAAGAGTACCGAGGCCGTTCTCAACAACAGATTCATTAAGGTGTTCTGGCACAATCCTGATAGTAAGCAAGAGAACACGGCGCCCAGCAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGTAGGGGCACTGTGTTACAACCAGGTGACGCGCGCCGCCTCGCAGCACCCCATGTCGAACAACAAGGTGTTCATCAACAAGGACAGCGTCAAGCCCGCCCGGGACGCGGACAAGGAACAAAAAGAGCTAGCGAACGGAGCTCTAGAACCCAAGAAGGAAGTCAACCCTCTCAAAAACGTCCCAGCTGTGGACAAAAGCAAGCGCGTCATGGAGATGTACCGACGTGGACGAGAATTACTGCAGACGCATTTGCACAACCAGACGCAGCTCATACAGAAACTGGAGTCTGGTAACGTGACTGGCGCTCAGAAGACCGCGCTAATGGATGCCATAAACTCTGCGCAGGAGGCCATAGAGAAGTTAAGGAAGGAGCTGGTGGCCTACAATGGCCTCATGAAGCAGATGCAGGATGAGACGCTAGCGCGGATGACCCGCCTCCAACTGAACCAGATCAATGCAAAGAAACCAAAGACAAGAGAGGAGGCACAGAAGGAGATTCTCGATGCTGAGTTGGATATGTTCACTAAACAACAGgaaGGACAGGATGTAACAGATCTGTTGAAGAAAATCGTGGAGCTAAGACGACAGATGGCGCTGAATTTCCCAGTTCATTCCAACATGAGGAGACCTATTTCTGCTAGagGCGGGCGCTTCAACCCGTCGATGCGGTTCAGTCGCAACCCCTCGCAGCCGGCGCCGAAGAGCTTCCCGGCCAGCACGTCGGTGGACCACCGGCCCAGGGCGCTGCTCATATCCGGCTTCGAGCCCGACGAGCTGGAGCCCTTGACGCAACACTTCTCGCAATTCGGCGAGGTGAGCAGTAAGGAGGTGGACCTGGCGGTGCCGCAGCTGGTGCTGCAGttcgcggcgcgcgcgcacgccGAGCTGGCCGTCGCGCACGGGAAACACTACAACGACAGGACACTATCGATCACGTGGGTCCAGAACAGCAAGCCGACCCCGGCGCCGGAGAAACGGACGCACAACGGCGACGCGACGGACGGACACGAATCAGTAGATGAGCCGGCGACATCGGAAGCGAACCTGCTACGCTCAGATGAAGAAGACGACGAGGATCACGAAGCACGTTCCTGGCGCCGCTAG
- Protein Sequence
- MNMDKTKVMSNVHVEPSPAMVENSALEVVDACDADPAALAKYVYALVKKEKPITELRDVMVDQLDVFLQHETKPFVHMLFKSLESNEYLKSKEGVEDSVEPTPAPLPEPEPEVEKPPIENLENHASNGAVSPVRAAPPPRRVVVPRAPPAKRAAHIHEQTLVKVLPLTELLEEPLDQPPRRRDRRNDPMRDKDDRRRRRSRSADRRPRPRRDHDRRHEPRRLSSRSPSPRRYRNRSPPPIDRQPSRSRSRSPMRDRDMDRERDRLREMERERMSRDREHRERLSRSRERERSRDRSRGSSPREPRMEINDAFKRRCRDFDEKGYCMRGDLCQWDHGLDPVVLEDAALSSVLTLPRAVPEYNPLLPDIWMAAPFPPPYPHHPHPHPPRELIPIPRIRHAAPPPAPLGALPRHPHPHPHPHPHPQQKKNFDYNRIGTRPPLPNVSANCSLEVKKVPRGMNDITHLNNHFSKFGKIVNIQVCFENDPEAALITFSNPTEANVAYKSTEAVLNNRFIKVFWHNPDSKQENTAPSNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKVGALCYNQVTRAASQHPMSNNKVFINKDSVKPARDADKEQKELANGALEPKKEVNPLKNVPAVDKSKRVMEMYRRGRELLQTHLHNQTQLIQKLESGNVTGAQKTALMDAINSAQEAIEKLRKELVAYNGLMKQMQDETLARMTRLQLNQINAKKPKTREEAQKEILDAELDMFTKQQEGQDVTDLLKKIVELRRQMALNFPVHSNMRRPISARGGRFNPSMRFSRNPSQPAPKSFPASTSVDHRPRALLISGFEPDELEPLTQHFSQFGEVSSKEVDLAVPQLVLQFAARAHAELAVAHGKHYNDRTLSITWVQNSKPTPAPEKRTHNGDATDGHESVDEPATSEANLLRSDEEDDEDHEARSWRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -