Cten007411.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- Tret1
- Assembly
- GCA_963573255.1
- Location
- OY754303.1:21974509-21978265[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 6 4.7e+03 -2.0 0.4 42 51 107 116 104 130 0.61 2 5 3 2.4e+03 -1.0 1.2 26 48 407 430 400 440 0.60 3 5 0.85 6.8e+02 0.7 0.0 19 52 438 470 437 473 0.74 4 5 4.6 3.7e+03 -1.6 3.9 32 48 474 492 470 501 0.53 5 5 6.2e-11 4.9e-08 33.2 22.2 2 70 556 615 555 615 0.84
Sequence Information
- Coding Sequence
- ATGGAAATTGACGAGAGACAGTTGTTTAAAGTTGAAGCGCTAAGCAACAAAGATGATCGTATCtcgaaaaaagtcaaaatgatCGATTTACTTCCTCAGTTAGCGGCTAGTTGCTTAATGTACTCGCTTGTTATACAGGCAGGAATTAACATGTCATTTGCATCCGTAATAATTTCACAACTAGgtgatggaaatgaaataaaaatggataCAAATACTGCATCGATTATTGCGTCAATCTGGTCGATTTCATTACCCTTTGGTGCCATTTCTTCTGGATTCTTAATGGATAAATTTGGTCGACGGAAGATTGGATTGTTTCTATGCATTCCTTTCTTCCTCGCATGGATATTAGTTAGTATGGCACAAAGTCtaactcaaatttatttagcaCGAATTTTGGCTGGAATATGTTGTGGCCTCACAGCAGTCAGTGTAGTTTATAGCGCTGAAATCAGCTATAAAACATTCAGAAGCTCCTTATTATGCATGAATTCAGTTTGGGTatcttttggaattttctcgACCTAtcttcttaattattttcatttgaactGGCGCTATATCGGATGGATTTATGCCTGCATATCTCTCTTATCGATGATGTTAATTCTTATCGTACCAGAATCACCCCATTGGATATtgtattttaatgataaattacTTGACgaacaaaagtttttgcaaTTGAAATCATGTCTTGCTTGGATTTATCGAAGTCCAAAGATTGCATCCGTACAATATGATGAATTAATTCAGAACTATGAGAGACATAAAGAGGAACAGAGAACAAATCAAAATGAACAACAGCATTGGATAAATGGCATAAAATTGCCTCAGGTCTATAAGCCATTAATTATTCTCGTCATAATATTTCTGTTACAACAGCTGTCCGGAGGATATATCCTGATTTTCTATACAATAAATATATTCAGAAACTTGGGCAGTGAGTTTCTGACAAGtgtagatgaaaatttagCATCTTTGTTGCTTGGAACTATTCGATTAATCATGGCAATTATTGCTGCCGTTTTATCAAAAAGGTGCAATAGAAAGTCTTTGCTGTATGCCTCAACAATTGGAATGACATTATTTGCATATTTGGCAGCTATTAAAATGTGGAACAGCAATCATGCTGGACATTCattcttcttgaaaaatacGAATGCTTCTTCCCAAATTCTGCCTGTCGAAAGCGATGCATCAAACTTTGGAAATTACTTCCTTTTAACATGCATACTTGCTTACATTCTCTTCGCATCTTTGGGCATCTTGATTATCCCATGGACGTGCATCGCAGAACTCTATTCCATAAAGTATAAAGCAAATTTTGGTGGCTTAACGGTCGCTATTGCTTACATTCTTATGTCTGCTGTGCTTAAAGCTTTTCCCTTTATGATCGACTCTCTGGATATTTACAtaatattcttcattttcgGAACATCAAGCTTATTATGCTGTATTTTTGTATACTTCTTCTTGCCTGAAACACAtcgaaaaacattttcagaaattgaaaattattttatagTGAGAAAAATGGATGTTAGCTCTGCCGATGAACTGTACATTCCTGGACAAAACATAACTTTCAAGGCCTCTCCAGTCGTTTATCGAAATCCAACTGTTTCtacatcatttttaattcatcaaaaattcggGAAATATCCTGTTGTCTTAACTTGTCCATTCTGTAAGGCAACAATCAAAaccaaaataagaaaagtacATCCATGCCTGGATTTTCTCTGCTGTTTATGCTGTTTCTGTTTTTGTTGCGCAATGAGATGCAAGAAGAAGAATCAtCTTTGTCGTCAATGTGGTGCTTATCTTGGAATGTATGATAAATAG
- Protein Sequence
- MEIDERQLFKVEALSNKDDRISKKVKMIDLLPQLAASCLMYSLVIQAGINMSFASVIISQLGDGNEIKMDTNTASIIASIWSISLPFGAISSGFLMDKFGRRKIGLFLCIPFFLAWILVSMAQSLTQIYLARILAGICCGLTAVSVVYSAEISYKTFRSSLLCMNSVWVSFGIFSTYLLNYFHLNWRYIGWIYACISLLSMMLILIVPESPHWILYFNDKLLDEQKFLQLKSCLAWIYRSPKIASVQYDELIQNYERHKEEQRTNQNEQQHWINGIKLPQVYKPLIILVIIFLLQQLSGGYILIFYTINIFRNLGSEFLTSVDENLASLLLGTIRLIMAIIAAVLSKRCNRKSLLYASTIGMTLFAYLAAIKMWNSNHAGHSFFLKNTNASSQILPVESDASNFGNYFLLTCILAYILFASLGILIIPWTCIAELYSIKYKANFGGLTVAIAYILMSAVLKAFPFMIDSLDIYIIFFIFGTSSLLCCIFVYFFLPETHRKTFSEIENYFIVRKMDVSSADELYIPGQNITFKASPVVYRNPTVSTSFLIHQKFGKYPVVLTCPFCKATIKTKIRKVHPCLDFLCCLCCFCFCCAMRCKKKNHLCRQCGAYLGMYDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -