Cten005405.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754303.1:1109149-1115809[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.0089 0.47 11.2 4.2 1 23 195 218 195 218 0.97 2 31 0.14 7.2 7.5 6.0 2 23 222 244 221 244 0.95 3 31 0.17 8.9 7.2 0.5 2 20 284 302 284 303 0.94 4 31 1.3 70 4.4 0.8 2 23 308 330 304 330 0.87 5 31 1.1 57 4.7 0.4 1 23 340 363 340 363 0.97 6 31 0.004 0.21 12.3 4.4 1 23 389 412 389 412 0.95 7 31 0.39 21 6.0 0.6 1 23 482 505 482 505 0.93 8 31 0.017 0.89 10.3 0.7 1 23 509 531 509 531 0.96 9 31 0.0071 0.38 11.5 3.5 2 23 740 762 739 762 0.91 10 31 0.023 1.2 9.9 0.7 1 23 828 851 828 851 0.92 11 31 0.0081 0.43 11.3 2.1 1 23 855 878 855 878 0.95 12 31 0.018 0.93 10.3 1.7 1 23 981 1004 981 1004 0.97 13 31 0.054 2.8 8.8 2.4 1 23 1008 1031 1008 1031 0.97 14 31 0.057 3 8.7 0.2 1 23 1175 1198 1175 1198 0.94 15 31 0.13 6.7 7.6 0.8 1 20 1202 1221 1202 1225 0.94 16 31 0.093 4.9 8.0 1.1 2 23 1310 1331 1309 1331 0.95 17 31 2.1 1.1e+02 3.8 0.3 1 23 1337 1360 1337 1360 0.94 18 31 0.55 29 5.6 1.1 1 23 1364 1387 1364 1387 0.95 19 31 6.7 3.5e+02 2.2 1.1 2 11 1450 1459 1449 1471 0.76 20 31 0.065 3.4 8.5 1.0 1 23 1504 1527 1504 1527 0.93 21 31 0.099 5.2 7.9 3.6 2 23 1581 1602 1580 1602 0.96 22 31 2.8 1.5e+02 3.4 0.5 1 23 1631 1654 1631 1654 0.81 23 31 0.016 0.82 10.4 1.5 2 23 1671 1693 1670 1693 0.95 24 31 0.09 4.8 8.0 3.4 1 23 1697 1720 1697 1720 0.96 25 31 0.0038 0.2 12.4 3.6 1 23 1730 1753 1730 1753 0.95 26 31 0.072 3.8 8.4 3.0 1 23 1762 1786 1762 1786 0.90 27 31 0.24 13 6.7 1.5 1 23 1870 1892 1870 1892 0.96 28 31 0.12 6.5 7.6 1.9 1 23 1898 1920 1898 1920 0.98 29 31 0.035 1.9 9.3 0.5 2 23 1971 1993 1970 1993 0.95 30 31 0.0048 0.26 12.0 2.7 2 23 2023 2045 2022 2045 0.96 31 31 0.87 46 4.9 2.1 1 21 2067 2087 2067 2088 0.95
Sequence Information
- Coding Sequence
- ATGGACACAAGTGTCCAATCTTCCAATCGCAAACAGTGCAGAGCCTGTTTAAGGCAGTATGAGTCCAGAAAAAACTTAATCTCTTTGCAATCTTTTGACCAAAATTCTCCATCTTCGGCGAGAATTAGATTTCATGATATGCTGTCAAACATCATGCATCAGACATTGCCGGAAAGCGATACGCTTCCTTCAAAAATCTGCATAATGTGTCTTTCATCGCTACGAGTTTCATATTACTTTCGTCTTGAGGTTGAAAAATCACAGGAAACGCtttcaaaaaagcttaaatCATCAAATGTTCGAATAGCCGTAAAAGAAGAAGGCACTGgaatcaacaattttccagTCATTATGCGACCAAGAACTGTCGAAAAGGACGTATTTCACGACTCGAATGTTTTGGATGAAGTTTTAATggaCACTGATGATGAAATAATCGATTATGAGCCGGATCTTGATTCCGTTATGGATTATAGTGAACATGGCAGTCCATCTAAAAACTCAGATCATCAAAGTGAATCAATAAGAAGTACAGATAcaagtaaaattaataatagcATTGAAGGAATAGAAAAAGGTATTTTTGATTGCTCGGATTGCCACAAGCCTTTCATTAATAATAAGGCTCTGCAATGTCATAAACGGACAATTCACTCAgtaaataaatgcaaatattgTCACAAAAAGTTAGGAAACAGACAACAACTAAAAATGCACACACGATTCAAACATCCAGACAAATACAGCGAATATAAAGCCGAGAACGATAAAACTATACCTGACGCTGCAAATGAGAACGAATGTCCAAAGAAGCCAATCGTGTTAGTTCAAAGACTGgataaattcaatgaatgcTCATCGTGCGAtcttaaatttacaaataaactTGCCCTTGTTAAGCATCATGCTGAATGTGACAGTAAATGTATTGATTGTGGCTTGAAAATTCCACGAAAAGATTTCTACTTTAAGCACTTGGAAACTGTTCATAATTATCCAAGCATTGATTTAGCAGGATACGAATGTCCTTTCTGTATGAATTTATTCCGTACCGAAAAAGTATTACAAGAACACATCCAACGATTACATCCCGACGAGAATCATTCAAATGTTGATACTGTTAGTGAAGCTGGCGAAAGTACTAGCACAGATGGAATAACTTTACATCAATGTAAAATTTGCACACAAAGTTTCCAgtcatcaaaaagtttaaagcaACATACAACAATCAAGCATAAGGACATATCTCGAGATACCAGCATAAATTCGACTACTGATAAGAAATTGAGTAGTAATGTCCGAAAATATACAAAGgatgaatttttcgaaaagttTATTGTCAAGAAATCTAATGACTTTTATCGATGTATTCCTTGTCGAAAGGATATTTATAAACGATCAATCATGTTGCATGCTAAGAGTAAACACGCAGCTATTAGATGTCATCGCTGTGAGTTGTGTAGTGAAGCTTTCTTTAGAACTGATTATCGTGTAAGACATGTTGCAGTAGCCCATCCAAATGACTATAAATGTATCGAATGTGATACCCAATTTGATCGAGCATACAAGTATGAAGCACACATGACACAACATGGACGAGTTCAAAAGATCTTAAAGCCTGATGAGGGAAAAGATCGTTTTGACTTATCTCCACATGATATTTACTACATTGAAGATTCATCAACCTTTGACTATACAAATGATCATTTATTGATAAACACTAGCAACTCAGAACAAATTGAATCAAATGATGAGGTAATTCCACTGTCCAAAGATGAGTTTTGTGAGAAATTTATGGTGTCAGCATCTGAACgaaatataaaatgtaatatCTGCAATGTGGAAATGCTGAAAAATAGTGTTGTTTCTCATCTAATGTGGAAGCATGCCTTAATAAAGCCACTCAAGTGTTCATTTTGCAATGACCGCGTTGTTAAGAATAATGCTCGATTAGCTCACATGGCACGCTGTCATCCAAACGAATATAAATGTTTAGATTGTAATGTACAATTTGCCAAACATTACATCTATGCTGATCATTTAAAAGAATTCCATCACATTAAAGTCACGTCAAGTCAATCTACTGGTGAGGAAGATGACCTTcacataaatgaaatgaaattcgtGTCCAACAGAAATGACGATGAAGTAATTGAGGAATCAGAGAACCTTAATATTATTGAAACAACTACACCTATCGTTGCTGAAAAGACGGTTTCCTGTCAAttttgtccaaaaaaattcacctcATCCAAGAATCTACTTATCCATAAGAGCcataagcataaaaatgaatctGCAGAAATTCCAGTACAAGATTTTTCAATAGATCCAATGGAGCCAATATCCTTTGatgaattcaaacaaaattgggtcgaatttattaatgaaaatgacttGAAATGTCTTGTTTGCGAGTTAGTAATGAAAgggaaaaattttggatctCATGTCAAATCTAAGCACTGTGTTAGTGGAGCTTATTTGTGTGCATTATGTCCAGAGAGTTTCTATCGTCCAGAACATCGAATTCAACACATGACTCAAAATCATCGCGGAATATTCTTTTGTAATACATGCAATATccaattttatagaaattctCGCTATGCTAAACACATGAATGAACTACATGGCattgaaattgataattaTGATAGTTATGAAGTCGACTTGAATCtaaatgaattaaagtttGTGCCATTCGTTCAGAGAATCCCGGAAGATGATCAGCTTTCTCTTCCATCTACAGTTAATGAACCAGATCCAATGGAAGAAATGATGCAATTAATAACATCAGAGGAAATGTCTCGAAATGAATTTATGAGAAGATATATTAAAGTTATTGGAAAAGATAGACATTGTTTGGCATGCGATAAAGTCTTTTTCCATTCATCAATCTATCATCATCTCATACATTTGCATTCAACAATTTTGCCATTTAAATGTCCATTCTGTGACGTTAGATTCGAGAGAACCGTACAACGCTCTAAACATCTTCAAATGTTCCATCCTGATGAATATAAATGCAATGAATGTGGCTTACAGTTCCAAAAGCATATAAAGTATAGTGAGCATATGTCAAGTGAGCACAATACTTTTGTAACTTCAGCAAAAAGTCCTCTAGAAGTTAGTGATTTGTCTTCATTGGATTTAAAGTATGTAGCTCATAAATCTACGGAAGAAAGTCTTTGGCAAGATGATGAAAGTGCTTTTATTAATTCCACCGGATATTCAGAGTATCAAGAAGAATCTAGAAACGATGaacttttgaatattaaaagcGATAAACCTGAAACTCCGACCATTTCATACGTTGAAGATGATCAATTAGTAGAAATTCCAGCACCTACAAATGTTCCAGCCCCAGCATTGGAAGATGAATTACCatatttagaatttaaggCAAAATATCTAAAACATATTGATGGCGCTTCCGCAAAATGCTTAGCTTGTAATcgaattatattaaaaacttcAGTTTGTGCTCACATGCGTCTATGGCATGCAACAGCTATGATCTATAATTGTGAACTATGTCCAATCGGTTTTCGTAGAGGAGATTATCGTATGAGACACATGGCTTTGCAACatcctgaaaatttcaaatgttcaGAATGTAATGTCCAATTTTACTACTCGGCAATGTACAAGGAACATTTATGGAGtgagcataaaattaaaatgaatatccCAATATTAAAGCACAAAGATGATATCGACGTTCCTCttgaaaacttgaaatttgcTCCTTACGTTCCAGAAGAACTTCGActTCATCCAGATGAATCAGGCACTAGAGCTGGTGGTCGAAGACGAAACTCACTTTGTATAGAAGTACCGACTACCAGTAAAGGAAACGCTGAAGATGGATATACTTATAAAGAATTCTATAATAAATACGTTGAAGCAAGAGGTGAAACGTCGAAATGTAAAGCATGTGGCAAAATATTCTCCAAATTGTCGATCAAGAAGCACATCAAACGGGAACATTGTACAAGAAAACCTTATAACTGCCAACTTTGTGATGAAGGCTTTTTAAGAATTGATGATCGACTTGGTCATATGAGAAGATATCATCCTGATTCATTTAAATGTCTAATGTGCGACatccaatttcatttctccGCTAGATACATTGATCACATGATTAATGTACACAGTATGACTGTAAATGTCGCATCCAATAAGTCAGAATATGAAGTTGATATTCCATTCGATAGACTACGCTTTAAACCTAATACCAATAATCAACAAAATGACACTGAAGGTGATGGAGGAATGTCTAGAGATGATTTTACGGGCAAATACTTATCTAGATTCCATAATGACGGCGAACTATATCTGCAATGTTCAGCATGTAATAAGTCGTTTACAGCAAAACAAAAGCGTTTCCATTTGTTACAACATCATGCAAAATTAAGACCTTTTGGATGTGAGCTTTGTGACGCGAGATTTTTGTCAAACTTCAAGAGAGTTAAGCACATGGAATTTCACCATCCAGACGACTTTAAGTGCCAAATGTGTAACAAGCAGTTTGAAAAATCTGAGATTTATGCAACTCATATGCAGGATGAACATAAAATAACTATTAAAGTTAATTCCAATATTGATGTGGATATTAATGGAGACGACATGCTTTATTATGAGAAAGTGAAAAAGGTGAAGCCACAAGCTAATGTTACGTCCAATAGTATGGAGGAATCTGataattcttcatttaatttaattgaaagtcTTCATTGCGATATCTGTAATATTGATTGTGACTCGTCAAGAAGCTATCGACAGCACATGAGAGATCATGTTGGCGGTATTGATTCCATTATTCAAAAACCTGAAATTAAAGTTGAGAAGAAGTCAGAGAAGCCGCAAGTTTCTGAACAAATATATCCGTGTGACTTGTGTGATAAGAAGCTATCGAGTGTTTTAGCAAGAAATGCTCACAAAAAGTTTAAGCACGGCGTATTTAAGGAGAAGCAAACGACTCCAAGTCAAAAAGTTGAAGTTGTTTGTGAAATGTGCGAATTTACATCCTACAGAAGAGATTATTTAGAACATCACATGAAGCAACAACATAAAGGCGAATTTAAGTGTCCTCATTGTAAACGGACTTTAAGCAGCTTCAATTATTATGCTTATCATGTTGAAACGAATCACTATACGAAACCAGATTTAACCAAGTTCTTTAAATGTTCAGACTGTGACAGCTGCTTTAAAATAGAGGAGAAtcttcaaaaacataaaaacttGTATCACGGTGAAAATCCACCTCAAAGAAGTCATTTCTGTAAACTTTGTACTATGAATTTCCGAGCTCCATCACACTTGGCAACACATTTGGAAACTTATACACACAGAAATTTGATAAACTTCTTTAACGGTCTACTAGTACCAAGTAGCAGCatgaatgtcaaaaatgaGCCGTGTGAGAAAAATGCCATTGAAAATCACTCATCCCAAACTGAAACTGCTGATAAGAACACGGAACAAACTGATAATGGTGAACCGGAAGCAAAACGTATTAAATTATCAACAGAGGAATCAGTTACTGAAAAAGATAAATTAGAATACTTGAAGTATATCCAGACCACAGAATCTGGTCACTTTAAATGTGGAATTTGTGGTAAAGTGAAAATTCTTCGTAAGCACATAATACGTCATTTAAAGCAGCATAAGGAAGTGCCAACTTATGATTGCGATAAATGTCCTGACCGTTTTGtattcaaaactaaatttgatCAGCACATGAAGAGTCATGAAAATGGAGGAAGTCTTGCAATCAACGGAACTGACAGTAACGTTAATGAAAGAGCAGCAGGAAGCAGTAAATCTGTTGAGTTAAAAGAAGCAGTAATAGAAGATGAGCATCCAAAGTTtcaagaaatgaagaaaagtcCACCGGAAATAAAATGTACAGTTTGCAATATCTCATTCAAGCTGACAATAATGTTAAATAAGCACAATTCTACATGGCATTCAGACAGTAATCCATTAAAAGATTTGACAATGAGTGATCAAAAGCATAAGAAACCCATTGAAACAGTTCTAGCTATAAAATTCTTACGTTGTGAGCATTGCAAAGAAGCTTTTATTAAGCATGAGGAACTAGAGCATCACGTTAAAATAGCACATagcaaaaataatgaagatgaCGATGAGGAAGATGAAGATATGGACTTGGAATTGGCGACTAAATTCAGCTGTGAAAGATGtccattaaaattccataacattaaatttctcgagaatcaccaaaaattcttctgCATCCATCGAAATCAGCCTCAACCCAAACTAGTTAAtgaacaataa
- Protein Sequence
- MDTSVQSSNRKQCRACLRQYESRKNLISLQSFDQNSPSSARIRFHDMLSNIMHQTLPESDTLPSKICIMCLSSLRVSYYFRLEVEKSQETLSKKLKSSNVRIAVKEEGTGINNFPVIMRPRTVEKDVFHDSNVLDEVLMDTDDEIIDYEPDLDSVMDYSEHGSPSKNSDHQSESIRSTDTSKINNSIEGIEKGIFDCSDCHKPFINNKALQCHKRTIHSVNKCKYCHKKLGNRQQLKMHTRFKHPDKYSEYKAENDKTIPDAANENECPKKPIVLVQRLDKFNECSSCDLKFTNKLALVKHHAECDSKCIDCGLKIPRKDFYFKHLETVHNYPSIDLAGYECPFCMNLFRTEKVLQEHIQRLHPDENHSNVDTVSEAGESTSTDGITLHQCKICTQSFQSSKSLKQHTTIKHKDISRDTSINSTTDKKLSSNVRKYTKDEFFEKFIVKKSNDFYRCIPCRKDIYKRSIMLHAKSKHAAIRCHRCELCSEAFFRTDYRVRHVAVAHPNDYKCIECDTQFDRAYKYEAHMTQHGRVQKILKPDEGKDRFDLSPHDIYYIEDSSTFDYTNDHLLINTSNSEQIESNDEVIPLSKDEFCEKFMVSASERNIKCNICNVEMLKNSVVSHLMWKHALIKPLKCSFCNDRVVKNNARLAHMARCHPNEYKCLDCNVQFAKHYIYADHLKEFHHIKVTSSQSTGEEDDLHINEMKFVSNRNDDEVIEESENLNIIETTTPIVAEKTVSCQFCPKKFTSSKNLLIHKSHKHKNESAEIPVQDFSIDPMEPISFDEFKQNWVEFINENDLKCLVCELVMKGKNFGSHVKSKHCVSGAYLCALCPESFYRPEHRIQHMTQNHRGIFFCNTCNIQFYRNSRYAKHMNELHGIEIDNYDSYEVDLNLNELKFVPFVQRIPEDDQLSLPSTVNEPDPMEEMMQLITSEEMSRNEFMRRYIKVIGKDRHCLACDKVFFHSSIYHHLIHLHSTILPFKCPFCDVRFERTVQRSKHLQMFHPDEYKCNECGLQFQKHIKYSEHMSSEHNTFVTSAKSPLEVSDLSSLDLKYVAHKSTEESLWQDDESAFINSTGYSEYQEESRNDELLNIKSDKPETPTISYVEDDQLVEIPAPTNVPAPALEDELPYLEFKAKYLKHIDGASAKCLACNRIILKTSVCAHMRLWHATAMIYNCELCPIGFRRGDYRMRHMALQHPENFKCSECNVQFYYSAMYKEHLWSEHKIKMNIPILKHKDDIDVPLENLKFAPYVPEELRLHPDESGTRAGGRRRNSLCIEVPTTSKGNAEDGYTYKEFYNKYVEARGETSKCKACGKIFSKLSIKKHIKREHCTRKPYNCQLCDEGFLRIDDRLGHMRRYHPDSFKCLMCDIQFHFSARYIDHMINVHSMTVNVASNKSEYEVDIPFDRLRFKPNTNNQQNDTEGDGGMSRDDFTGKYLSRFHNDGELYLQCSACNKSFTAKQKRFHLLQHHAKLRPFGCELCDARFLSNFKRVKHMEFHHPDDFKCQMCNKQFEKSEIYATHMQDEHKITIKVNSNIDVDINGDDMLYYEKVKKVKPQANVTSNSMEESDNSSFNLIESLHCDICNIDCDSSRSYRQHMRDHVGGIDSIIQKPEIKVEKKSEKPQVSEQIYPCDLCDKKLSSVLARNAHKKFKHGVFKEKQTTPSQKVEVVCEMCEFTSYRRDYLEHHMKQQHKGEFKCPHCKRTLSSFNYYAYHVETNHYTKPDLTKFFKCSDCDSCFKIEENLQKHKNLYHGENPPQRSHFCKLCTMNFRAPSHLATHLETYTHRNLINFFNGLLVPSSSMNVKNEPCEKNAIENHSSQTETADKNTEQTDNGEPEAKRIKLSTEESVTEKDKLEYLKYIQTTESGHFKCGICGKVKILRKHIIRHLKQHKEVPTYDCDKCPDRFVFKTKFDQHMKSHENGGSLAINGTDSNVNERAAGSSKSVELKEAVIEDEHPKFQEMKKSPPEIKCTVCNISFKLTIMLNKHNSTWHSDSNPLKDLTMSDQKHKKPIETVLAIKFLRCEHCKEAFIKHEELEHHVKIAHSKNNEDDDEEDEDMDLELATKFSCERCPLKFHNIKFLENHQKFFCIHRNQPQPKLVNEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320104;
- 90% Identity
- -
- 80% Identity
- -