Crip009499.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01011231.1:26284-34069[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.028 1.7 9.4 5.2 1 23 193 216 193 216 0.96 2 32 0.0086 0.52 11.0 2.4 3 23 221 242 220 242 0.94 3 32 0.043 2.6 8.8 0.5 2 20 276 294 276 295 0.94 4 32 2.2 1.4e+02 3.4 0.5 2 23 300 322 296 322 0.85 5 32 0.87 52 4.7 0.4 1 23 332 355 332 355 0.97 6 32 0.0037 0.22 12.1 3.8 1 23 381 404 381 404 0.95 7 32 1.3 78 4.1 2.3 1 23 474 497 474 497 0.93 8 32 0.00052 0.031 14.8 0.7 1 23 501 523 501 523 0.98 9 32 0.34 21 5.9 2.7 1 23 654 677 654 677 0.93 10 32 0.013 0.75 10.4 4.0 3 23 733 754 731 754 0.91 11 32 0.018 1.1 10.0 0.2 1 23 821 844 821 844 0.93 12 32 0.016 0.96 10.1 2.1 1 23 848 871 848 871 0.95 13 32 0.011 0.64 10.7 1.3 1 23 976 999 976 999 0.97 14 32 0.063 3.8 8.2 3.3 1 23 1003 1026 1003 1026 0.95 15 32 0.0046 0.28 11.8 0.4 1 22 1173 1194 1173 1196 0.91 16 32 1.7 1e+02 3.8 0.7 1 20 1200 1219 1200 1223 0.92 17 32 0.47 28 5.5 0.8 2 23 1309 1330 1308 1330 0.90 18 32 1.2 69 4.3 0.5 1 23 1336 1359 1336 1359 0.95 19 32 0.26 16 6.3 0.5 1 23 1363 1386 1363 1386 0.95 20 32 7.4 4.5e+02 1.7 0.3 2 13 1458 1469 1457 1479 0.88 21 32 0.026 1.6 9.4 0.7 1 23 1512 1535 1512 1535 0.92 22 32 0.21 12 6.6 3.9 2 23 1591 1612 1590 1612 0.96 23 32 4.5 2.7e+02 2.4 0.4 1 22 1641 1662 1641 1664 0.79 24 32 0.0088 0.53 10.9 1.4 3 23 1682 1703 1680 1703 0.95 25 32 0.05 3 8.5 3.3 1 23 1707 1730 1707 1730 0.98 26 32 0.00081 0.049 14.2 3.1 1 23 1740 1763 1740 1763 0.97 27 32 0.061 3.7 8.3 3.9 3 23 1774 1796 1772 1796 0.89 28 32 0.68 41 5.0 2.7 1 23 1877 1899 1877 1899 0.93 29 32 0.033 2 9.1 1.0 1 23 1905 1927 1905 1927 0.95 30 32 0.039 2.3 8.9 0.7 2 23 1978 2000 1977 2000 0.95 31 32 0.0075 0.45 11.1 1.0 2 23 2030 2052 2029 2052 0.97 32 32 0.38 23 5.8 1.0 1 21 2072 2092 2072 2093 0.95
Sequence Information
- Coding Sequence
- atgGATACGAGTGTTCAATCTTCCAATCGCAAGCAGTGTAGAGCCTGTTTAAGGCAATATGAGTCCAGAAAAGACTTGATTTCTTTACAAtcttttgatcaaaattctCCATCTTCGGCAAACATCAGATTTCATGATATGCTCTCGAATATCATGCAGCAAACTCTGCCGGAAAGTGATATGCTTCCATCAAAAATCTGCATAATGTGTCTTTCGTCGTTGCGAATTTCATACTACTTTCGTCTTGAGGTTGAAAAATCACAAGAAACGCTTTCAAAAAAGCTCATATCATCAAATGTTCGAGTCACCATCAAAGAAGAAATTCCTGGAGTCAACAATTTTCCAGTTATTATGCGTCCAAGACATGTAGAAAAGGATGCATTTCAGACTTCAACTATTATGGACGAGGTCTTAATGGACActgatgatgaaataattgattatgAGCCAGATCTTGATTCTGCAATGGATTTTAGTGAACAAGGCAGTCCATCAAAAAGTTCAGACATTCATAATGAGTCTGTAAGAAGCACTGACAAACTTAATATTAGCGTTGAAGGATCAGAAAATGGTAATTTTGATTGTCCAGATTGCCAAAAGCATTTCACTAGCAATAAGGCCATGCAATGTCATAAGCGGACAGTTCATTCATCAAATAGTTGCGTATATTGTCAGAAAAAGTTTGGAAACAAACAACAAATGAAACTGCACATAAGATTCAAGCATCGAGACAGATACAGCGAATATGTGGCTGAGAATGACAAAGCTGAAAATGAAAGTCACACAGGTCCTATAGTTCTAGTCGAAAGACTTGAGAAATTCAATGAATGCTCAACATGCGAtcttaaatttacaaataaactTGCCCTTGTTAAGCATCATGCTGAATGCGATAGTAAGTGCATTGACTGTGGCTTGAAAATTCCACGGAAAGATTTCTATTTCAAGCATTTAGAAATTGTTCATAACTATCCATGTATTGACTTAGCAGGATATGAATGTCCTTTCTGCATGAATTTATTCCGTACCGAAAAAGTATTACAAGAACATATCCAACGCTTACATCCAGacgaaaatcaatcaaatgttGATACAGTCAGTGAAGCTGGAGAGAGCACTAGCACAGATGGAATTACTTTACATCAATGTACAATCTGCTCTCAAAGTTTCCAGTCATCAAGAAGTTTAAAGCAACATACAACAATTAAGCATAAAGATTTGTCGCGTGATGCCAGCGTAAATTTGGGCATTGATATGAAATTGAGCAGCAATGTCCGCAGATATacaaaagatgaatttttcgaaaaatttattgtcaagaaatcaaatgatttttatcgcTGTATTCCGTGTCGAAAGGATATTTATAAACGATCAATTATGCTCCATGCTAAGAGTAAACATGCTGCCATTAGATGTCATCGATGTGAATTATGTAGCGAAGCATTCTTTAGAACTGATTATCGTTTAAGACATTTCTCAATGGCCCATCCAAATGATTATAAATGTGTTGAGTGTGATACACAGTTTGATCGAGCATATAAATATGAAGCACATATGACACAACACGGAACaatacaaaacattttaaaaccaGAAGAAGGAAGCGATCGTTTTGATTTATCTCCACATAATATTCTCTATATTGAAGATTCATCTACTTATGACTACAGTAACGAcgatttattgattaatgCAAGCAATTCAAAACCAATTGAATCTAATGATGAGGTAGTTCCACTGTCCAAAGATGATTTTTGTGAGAAATACACGGTTACAGTATCTGATAAAAATGTCAAGTGTAACATTTGCAATGtagaaatgcttaaaaatagcGTTGTTTCTCATCTCCTATGGAAGCATGCATTAATTAAGCCACTAAAGTGTTCATTCTGCAATGATCgagttgttaaaaataatgctCGATTAGCTCACATGGCACGTTGTCATCCAAATGAgtacaaatgttttgaatgCAATCTGCAATTTGCAAAACATTATTTGTATGCTGATCATTTAAcagaatttcatcaaaatagaCCTTTAACAGGTAAATCAACAGGCGAAGAAGACGATCTTCATATCAATGACATGCGATTTGTTAGTAACAAAAATGACGACGAAGTTATTGAAGAATCggacaatttaaatattgaaacgAGTATAATTCCAAGTGTTCCtgaaaaaacaataaactGTCAATTctgtccaaaaaaattcacatcaacCAAGAACTTACAGATTCACAAGAGCCATAAGCATAGAAGTGAATATGCAGAAGTGTATCCTGTACAAGACACTCTGACAGATCCAATGGAGCCTATATCATTTGATGAGTTTAAACAAAACTGGGTCGAGTTTctcaatgaaaatgatttgaaatgtCTAGTTTGTGAGCAAGTTATGAGAAGAAAGAACTTCTCGACTCATGTCAAGTCTAAGCATTGTGTCAGCGGTGCATATTTGTGTGCATTATGTCCAGAAAGTTTTTATAGACCAGAACAAAGAATTCAACACATGAGTCAAAATCACCGTGGCATTTTCTATTGTACTTCATGCAATATccaattttatagaaattctCGTTATGCTAAGCACATGAATGATCTTCATGGAATTGAAATCGATAATTATGACAGTTATGAAGTGGATTTAGGTctagaagaattaaaatttgtgccATTTGTTCAGAGAATTTCAGAAGATGATCAACTGTCAATCACATCATCTACAGTAAATGAACCAGATCCAATGGAAGGAATGATGCAATTATTGTCTACATCAGAAGAAATGACTCGAAACGAATTTATGAGCAGATATATTAAAGTGATGGGAAAAGAAAGACACTGCTTAGCGTGTGATCAAATGTTTTATCACTCATCAATATATCATCATCTTATTCATTTACATTCAACAGTTTTGCCATTTAAGTGTCCATTCTGTGATGTTCGCTTTGAAAGAACTGTACAACGATCAAGACATCTCCAAATTTTCCATCCTGATGATTATAAATGCAATGAATGTGGTCTACAATTTCCTAAGCATATAAAGTATAGTGAGCATATGTCACATGAACATAACATTATCGTGACTACAACAAAGAGTCCTTTAGAAGTTAGAGATCTGTCATCATTGGATTTAAAATATGTAGCTCAAAAATCGATGGAGGAAGGACTGTGGCAAGACGATGAAAGCTCATATGCTAATTCCACTGCATTTTCTAATGAACATCAAGTTGAATCTAATAATACAAACACTACacatatgaatttaaaaactgatCACGATGAAAATCCCACAATTTCATATGTCGAAGATGATCAATTAGTAGAAATTCCAGCACCAACTAATGTTTCAGCACCAGCATTAGACGATGAATTACCATATTCAGATTTTAAGgcaaaatatcttaaaaatattgatggcGCTTCTGCAAAATGTGAAGCTTGTAATcgtataattttaaaaacatcagTTTGTGCTCATATGCGATTATGGCATGCAACAGCAATGTTATATAACTGTGAATTATGTCCAATTGGTTTTCGCAGAAGTGATTATCGAACCCGTCATATGGGTTTTGCACATCCAGAAAGTTATAAGTGTTCAGAGTGCAATCTCCAATTATATTATTCAGCAATGTATAAAGAACATTTATGGAGcacacataaaattaaaattgatgttcCAATTTTGAAGCATAAGGACGACATAGACGTTCCTCTTGAGAATATGAAATTTGCCCCATACGTTCCAGAAGAGCTTCGAcTTCATCAAGATGAATCGGGCAATAAAAAAGGTGGTGCTCGAAGAAGAAACTCGCTTTGCATTGAAGTACCGACAACAAGTAAAGGAAACGCTGAGGATGGATATacttataaagaattttacaataaattcattgagcCCAGAGGTGAAGTGTCAAAATGTACAGCTTGTGGCAAAATTTTCTCTAAATTGTCAATCAAAAAACATGCCAAACGCGAACATTGTACTAGAAAACCTTTTAACTGCCAACTTTGTGATGAaggatttttgagaattgatgATCGACTTAGTCACATGAAAAAACAACATCCGGATTCATTCAAATGTCTCATTTGtgatgttcaattttatttgtccACAAGATATATTGATCACATGTTAAATGAACACAGTATGACTCTGAACATTGCATCCAACAAGTCAGAATATGAAGTAGACATCCCATTCGATAAATTGCGTTTTAAGCCTAACATTAACAACAGTAATAACGATCAAAACGGCACTGGAAGTAACATCAACAAGTCATCCGATGGAGGAATGTCGAGAGATGATTTTAcaagtaaatatttaagtaGATTCCATATTGACGGTGAATTACACATGCAATGTTCTGCATGCAATAAACCTTTCGCATCTAAACAGAAACGATTCCATTTATTGCAACATCATGCGAAATTACGACCTTTTGGATGTGAACTTTGTGACTCAAGATTCTTATCGAATTTTAAGCGAATCAAACATATGGAATTCCATCATCCAAACGATTTTAAATGCCAAATTTGTAACAAGCAGTTTGAAAAATCGGAAATTTATGCGAGTCATATGCAGGATGAACATGTAATAACTATTAAAGTTAATTCTAATATTGATGTAGATATAAATGGAGATGATATGCTTTACTATGAAAAAGTAGATAGAACGAAAACAAGTCTGGCGAATGTTACATCCAATAATAGTCTGGATGAATCTGacaattcttcatttaatCTAATTGAAACTCTCCATTGCGATGTCTGTAAAATTGATTGTGACTCGTCAAGAAGTTATCGACAGCACATGAGAGAACATGGTGGTGGAGTTGATTCCACAAttcaaaaagatgaaattaagattgaaaataaagtagaAAAGCCAGTTGTTCCTGAACAAATGTACCCTTGTGACTTGTGTGATAAGCAACTGTCGAGTATTTTAGCCAGAAATGCTCACAAGAAATTCAAACATGGAGTTTTTAAGGATAAGCAAACCGCACCGAgtcaaaaaatggaaattatttgtgaaatttgCGAGTTTACATCCTACAGAAGAGATTATCTTGAGCATCATATGAAGCAAAAGCATAGAGGAGAATTTAAATGCGAACATTGTAAACGCGCTTTGAGCAGTTTCAACTATTATGCTTATCACATGGAAACAAATCATTTCACTAAACCAGACTTGTCTAAACTCTTCAAATGCTCAGACTGCGACagctattttaaatttgaagataaTCTGCAAAAACATAAGAGATTATATCATGGAGAAAATCCACCACAAAGAAGTCATTTATGTAAACTTTGTACGATGAATTTCCGTGCTCAATCACATCTAACAACTCACTTAGAAACttatacacacaaaaatttgataaacttCTTTAATGGCACATTCTCAAGTACCAGCAAACGTGTCAAAGATGAGCCATGTGAGAGAACTGTCTTGGAAAATCTTTCCGACCAAAATGATGATAAGAAATTGACACAAAATGATAACGAGGAACCGAAAGCAAAACGTATAAAATTGGCAACAGATGAATCGATTACTGAAAATGATAAGCTAGAGTACTTAAAGTATTTACAGACCACAGAATCTGGTCACTATAAATGTGGTATATGTGGAAAGGTAAAAAATCTTCGAAAATACATGCTACATCACTTAAAGCAGCATAAGGAAGTGCCTACTTATGATTGCGATAAATGTCCTGAACGTTTTGTATTTAAAACAAAGTTTGATAAGCACGTGGAACTACATGAAAATGGAAGTATCATAGCAATGAATGGCAACAATGaatctaaaaataacaaactaGCAGGAAATAGTAAAGTTATTGAGTCAAAAGAAGCTGTGATCGAAGAAGAGCATCCAAAGTTCcaggaaatgaagaaaaatccaCCGGAAATAAAGTGTAAAGTTTGTAATGTCTCATTCAAGCTGACAATAATGTTAAATAAGCACAACTCGACATGGCATTCAGATAGTAATCCATTTAAAGAATTAACAATGAGTGATCAGAAACATAAGAAAAGCAATGAAATAGTTCCAACAATAAAATTCCTACGTTGCGAGCATTGCAGAGATGCTTTTACAAAGCAAGAGGAGCTAGATAATCATATAAAAACTgcacataataaaattattgatgacgACGATGAGGAAGATATGGATGTAGAAGTAACTTCTAATTTTAGCTGTGAAAGATGtccattaaaattccaaaacatcaaatttctcGAGAATCACCAAAAGTTCTTCTGTATCCATCGTAATCAACCCAAATTGGTtaatgaacaataa
- Protein Sequence
- MDTSVQSSNRKQCRACLRQYESRKDLISLQSFDQNSPSSANIRFHDMLSNIMQQTLPESDMLPSKICIMCLSSLRISYYFRLEVEKSQETLSKKLISSNVRVTIKEEIPGVNNFPVIMRPRHVEKDAFQTSTIMDEVLMDTDDEIIDYEPDLDSAMDFSEQGSPSKSSDIHNESVRSTDKLNISVEGSENGNFDCPDCQKHFTSNKAMQCHKRTVHSSNSCVYCQKKFGNKQQMKLHIRFKHRDRYSEYVAENDKAENESHTGPIVLVERLEKFNECSTCDLKFTNKLALVKHHAECDSKCIDCGLKIPRKDFYFKHLEIVHNYPCIDLAGYECPFCMNLFRTEKVLQEHIQRLHPDENQSNVDTVSEAGESTSTDGITLHQCTICSQSFQSSRSLKQHTTIKHKDLSRDASVNLGIDMKLSSNVRRYTKDEFFEKFIVKKSNDFYRCIPCRKDIYKRSIMLHAKSKHAAIRCHRCELCSEAFFRTDYRLRHFSMAHPNDYKCVECDTQFDRAYKYEAHMTQHGTIQNILKPEEGSDRFDLSPHNILYIEDSSTYDYSNDDLLINASNSKPIESNDEVVPLSKDDFCEKYTVTVSDKNVKCNICNVEMLKNSVVSHLLWKHALIKPLKCSFCNDRVVKNNARLAHMARCHPNEYKCFECNLQFAKHYLYADHLTEFHQNRPLTGKSTGEEDDLHINDMRFVSNKNDDEVIEESDNLNIETSIIPSVPEKTINCQFCPKKFTSTKNLQIHKSHKHRSEYAEVYPVQDTLTDPMEPISFDEFKQNWVEFLNENDLKCLVCEQVMRRKNFSTHVKSKHCVSGAYLCALCPESFYRPEQRIQHMSQNHRGIFYCTSCNIQFYRNSRYAKHMNDLHGIEIDNYDSYEVDLGLEELKFVPFVQRISEDDQLSITSSTVNEPDPMEGMMQLLSTSEEMTRNEFMSRYIKVMGKERHCLACDQMFYHSSIYHHLIHLHSTVLPFKCPFCDVRFERTVQRSRHLQIFHPDDYKCNECGLQFPKHIKYSEHMSHEHNIIVTTTKSPLEVRDLSSLDLKYVAQKSMEEGLWQDDESSYANSTAFSNEHQVESNNTNTTHMNLKTDHDENPTISYVEDDQLVEIPAPTNVSAPALDDELPYSDFKAKYLKNIDGASAKCEACNRIILKTSVCAHMRLWHATAMLYNCELCPIGFRRSDYRTRHMGFAHPESYKCSECNLQLYYSAMYKEHLWSTHKIKIDVPILKHKDDIDVPLENMKFAPYVPEELRLHQDESGNKKGGARRRNSLCIEVPTTSKGNAEDGYTYKEFYNKFIEPRGEVSKCTACGKIFSKLSIKKHAKREHCTRKPFNCQLCDEGFLRIDDRLSHMKKQHPDSFKCLICDVQFYLSTRYIDHMLNEHSMTLNIASNKSEYEVDIPFDKLRFKPNINNSNNDQNGTGSNINKSSDGGMSRDDFTSKYLSRFHIDGELHMQCSACNKPFASKQKRFHLLQHHAKLRPFGCELCDSRFLSNFKRIKHMEFHHPNDFKCQICNKQFEKSEIYASHMQDEHVITIKVNSNIDVDINGDDMLYYEKVDRTKTSLANVTSNNSLDESDNSSFNLIETLHCDVCKIDCDSSRSYRQHMREHGGGVDSTIQKDEIKIENKVEKPVVPEQMYPCDLCDKQLSSILARNAHKKFKHGVFKDKQTAPSQKMEIICEICEFTSYRRDYLEHHMKQKHRGEFKCEHCKRALSSFNYYAYHMETNHFTKPDLSKLFKCSDCDSYFKFEDNLQKHKRLYHGENPPQRSHLCKLCTMNFRAQSHLTTHLETYTHKNLINFFNGTFSSTSKRVKDEPCERTVLENLSDQNDDKKLTQNDNEEPKAKRIKLATDESITENDKLEYLKYLQTTESGHYKCGICGKVKNLRKYMLHHLKQHKEVPTYDCDKCPERFVFKTKFDKHVELHENGSIIAMNGNNESKNNKLAGNSKVIESKEAVIEEEHPKFQEMKKNPPEIKCKVCNVSFKLTIMLNKHNSTWHSDSNPFKELTMSDQKHKKSNEIVPTIKFLRCEHCRDAFTKQEELDNHIKTAHNKIIDDDDEEDMDVEVTSNFSCERCPLKFQNIKFLENHQKFFCIHRNQPKLVNEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00321137;
- 90% Identity
- -
- 80% Identity
- -