Basic Information

Insect: Chironomus tentans
Gene Symbol: -
Assembly: GCA_963573255.1
Location: OY754302.1:8858536-8862247[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.1e-05 0.00056 20.4 0.9 1 23 172 194 172 194 0.97

2 15 0.0039 0.2 12.3 3.3 1 23 200 222 200 222 0.97

3 15 0.00096 0.051 14.3 0.6 1 23 345 368 345 368 0.94

4 15 0.016 0.86 10.4 0.4 1 23 375 398 375 398 0.92

5 15 2e-07 1e-05 25.9 1.3 1 23 454 476 454 476 0.99

6 15 0.0094 0.5 11.1 0.0 3 23 499 519 499 519 0.97

7 15 0.14 7.2 7.5 0.5 1 23 525 548 525 548 0.92

8 15 0.01 0.55 11.0 2.0 2 19 556 573 555 574 0.96

9 15 0.0001 0.0055 17.3 5.2 1 23 583 605 583 605 0.97

10 15 0.0038 0.2 12.4 1.7 2 23 611 632 610 632 0.96

11 15 4.5e-06 0.00024 21.6 0.3 1 23 638 660 638 660 0.98

12 15 0.00058 0.03 15.0 0.3 1 23 666 688 666 688 0.98

13 15 0.0007 0.037 14.7 2.2 1 23 694 716 694 717 0.95

14 15 0.016 0.82 10.4 0.1 1 23 731 753 731 753 0.97

15 15 0.00019 0.0098 16.5 0.3 1 23 1057 1079 1057 1079 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.1e-05	0.00056	20.4	0.9	1	23	172	194	172	194	0.97
2	15	0.0039	0.2	12.3	3.3	1	23	200	222	200	222	0.97
3	15	0.00096	0.051	14.3	0.6	1	23	345	368	345	368	0.94
4	15	0.016	0.86	10.4	0.4	1	23	375	398	375	398	0.92
5	15	2e-07	1e-05	25.9	1.3	1	23	454	476	454	476	0.99
6	15	0.0094	0.5	11.1	0.0	3	23	499	519	499	519	0.97
7	15	0.14	7.2	7.5	0.5	1	23	525	548	525	548	0.92
8	15	0.01	0.55	11.0	2.0	2	19	556	573	555	574	0.96
9	15	0.0001	0.0055	17.3	5.2	1	23	583	605	583	605	0.97
10	15	0.0038	0.2	12.4	1.7	2	23	611	632	610	632	0.96
11	15	4.5e-06	0.00024	21.6	0.3	1	23	638	660	638	660	0.98
12	15	0.00058	0.03	15.0	0.3	1	23	666	688	666	688	0.98
13	15	0.0007	0.037	14.7	2.2	1	23	694	716	694	717	0.95
14	15	0.016	0.82	10.4	0.1	1	23	731	753	731	753	0.97
15	15	0.00019	0.0098	16.5	0.3	1	23	1057	1079	1057	1079	0.96

Sequence Information

Coding Sequence: ATGGATGATCATAATTTTATGCTTTGGTCTGATCGCAGTCATGAGGAGCCAAATTATGATGATATCATTGAGAATGATACCGAAATTGATGATATAAATGAGTTGATAGAAGAGCAGGTTGAAGGATATGAAGAAGTTAATATGTTGGAAGAAAATTCTAATGGAGATGATGAAACTTATTATATCGACGAGGATATAATGCCCGAAAAATATGattcacaagaaaatttaatctacCTCACTGATGATGGAATTATCAGTAAGAGCTCACAAATTGGTGTCGGAATAAGTCATTTAATTGAGCAACGAGTTCAGGAAGCAGAATCGAAAATTATTGGCGATCAAGATGCACAAGAAGAGTATACAGCAGAGGTAATTACAGAGGAAGACTGGATACAATCTCAGGGAGAGGAAATAGTGCCAGTTGCAATGGAACAAATTGTGTCTTCCGAAAATTATCCAGAGGATGATGTTGTGCCATTACAAACAGATGAATATACCACACAACGACCATATCCCTGTGATTTCTGTAGTCGTCGCTTCCGCAAAAAAGCCAATTTACAAAATCATATGATTGCACATCAAAATGTTCGTCCTCATATGTGTAATTTATGCGGCTCGCGTTATGTAAGAAAGtgtgatttaattaatcacttaaaaattcacGCATATAATATTGAAGATGACCAAATGGCTGGTCCAAGTACTAGTGGTAAAAAGAAGCCACCAAAATACGACGATTTAGCATTCTTTAGTGAATCGTATGATGATCTTCCAGACGACGATGATTTTGATTACAATCATTACTCTAAACCGACCACAAAGCCATTGCCAAAAGCTACAAAACAAAGTTCAAAAGCAACAAACAAAAAGACTACAGCAAAGAGAGGAAAAACATTACCAACAAAATTCGAAAGAATAACGAAGGAGAAGCCAGTTCATGTCACAAATATAACAGTTAACAATACACCAGCAAGCATTAAGAAGGAAGAGTATGTTGAGAAATATCCAATACTGGATTCAAGGAAGCCTTTTGTCTGTCAAAATTGTGGTGTAGCCTTTACTCGTGAGAAAGCATTAGAATCACACAATAAACATGCTCATGCCAATTTAGAGCCAACACATGATTGTGAAATCTGTGGAGATTCCTTCTTTGACAATACGACACTAGAAGAGCACTTAGAATTACGACACAACTATTCATCTAGAATACGTAAAAGTGGTGGAAAGACCACGAGCGgtggaaaagtttttcctaGTCGTGCCGCTCAAATGATAGACTTTGAGGATAGTGATAATTCAGAGTATGAGCCAGAAAAGGATATGGAAGATGATGAGGATTTCGAGGATGATGGAGAATATAGCTGCGATAAATGTGatatgtcatttaaaaatgccGAAAGTTTAAAACGTCACATAAAGACACATTTCATAAAGTCAGAAGTAATGTCCGATGATGAAGGACCAGTCAAAACAGAACCAACCAATTTGGGATGTAATGTTTGCGGAGAGAGCTTCACAGAAGCATTAGACTTGTTAGCTCACGCAGAAATTCATGCTCGATTTCAGCCATTTAAGTGCTTATTATGCGGTGAGACATTCTTTGAGGAAAATAAGATCAAGATGCATCTAATGGAAAATCATCGCGACGAAATGACTGAATCATCATGTAAGCTCTGTGGCAAGCAATGTCGCGATCAACGGTCATTAATCAAGCACTCGTGGGAACATTCACGCGAAAAGAATCATTCATGCTCAAAATGTGGGAAAACATTTCATAATAAGGCACGCTTGAAACGTCATATTGCATCGCATAGGAACAAGAGTGTTGTATGCGAAATCTGCCATGAGGAATTCTCGGACGGTCGACAGCTCATGAATCATCGTCATTCGCACACAAAATCTAATCAATTTCCATGTACTGAATGCGGCAAGACTTTTGGATCTAGAAGCTCACAGCAAATCCATATTCGAATTCATACTGGAGAACGTCCCTATTCGTGTCGTTTCTGTTGGAAGGCATTTGCTGACGGAGGAACTCTGAGGAAGCACGAAAGAATTCATACAGgTGAAAAACCTTACTGCTGCTTAGTGTGTCCTCGTGCCTTCAATCAGCGCGTAGTTCTACGTGAGCATATTCGTTCGCATCATTCAGCACCAGATCCAGTTCATGGAACTACATTAACGCCATATTACTGTAGTCTTTGTGGTGAATTATTTGCAGTCTCATTGGatttaattcatcatttaatcGAGCATAGCGATAGAAGTACAGCAGCTAAGCGTGTCCAACCGACGGGTCCACGAAAGTATAAGAGACGTCGAAAGTTGAATGATGATGAGATGCTGCCAGTTGATGGAAAATATCCAAGAATTCCACAGAGTAAAATTAAGCAAGAACCAGCTGATATTGAGAGCAATAGTGAGAGTAATAGCAGCAGCAACAATCACatgattattaataataacaacaataagaAGGGATTATTAACTCAATCATTTGAATCTTACGTAGTGCCTGATAGAGTAATTGAATTTAAGCTTCCGGATGAAATATTCCAAACAGTCTCCCGCGATCGAAAAAATGAGGAGAAGAAGCAACAGCAAGTACAAACGAGTTCAAGACCGAAAATGATATTTACGGAGAAAACAAGAGTTCCTGCTTTCGACGGTAAACGTAAGTCACGGACAATGATCCAAAAACAAGTTCTTAAGCCACATCCCACCACATCAAGAATGGTCAGGACTATAAAGAAGGAAGTAAAGAATAAACCCTCAATAATTCAGGAACGATATGCGTATAACGATAAAAGTACGTCTGGTAGTGAGACATGCTCGAATGAAGACGATCCAAATGAAGATGTTCTTCGTACCTTACTCAAGCGCGAACGAAAGTTGTCAGAGAAATTCACAATCGATTTAGTCAATGATTTACAAGATATTTTAAGGTCACCAATCAAGACAAATCTCAATATCGATGAGGATGATGATCAATATCCAGAATTGCCAAATGTCCGTCGTCGTAATACTGTATCGAGATATTCAATAAGTGTGACAAACAACAATGCAAATGGAgccaaaaatgataataaccacgataatgatgatgagcaGTCAGAATCGGAACTAGAGAATATTGTTATTAAGCAAGAATATGTTAATGATGGTCATGTTTGTAATATATGCGGCTCTTCTTTCTCATCACGAGATCAGTTATTAGGGCACGTATCTATTCATAtttaa
Protein Sequence: MDDHNFMLWSDRSHEEPNYDDIIENDTEIDDINELIEEQVEGYEEVNMLEENSNGDDETYYIDEDIMPEKYDSQENLIYLTDDGIISKSSQIGVGISHLIEQRVQEAESKIIGDQDAQEEYTAEVITEEDWIQSQGEEIVPVAMEQIVSSENYPEDDVVPLQTDEYTTQRPYPCDFCSRRFRKKANLQNHMIAHQNVRPHMCNLCGSRYVRKCDLINHLKIHAYNIEDDQMAGPSTSGKKKPPKYDDLAFFSESYDDLPDDDDFDYNHYSKPTTKPLPKATKQSSKATNKKTTAKRGKTLPTKFERITKEKPVHVTNITVNNTPASIKKEEYVEKYPILDSRKPFVCQNCGVAFTREKALESHNKHAHANLEPTHDCEICGDSFFDNTTLEEHLELRHNYSSRIRKSGGKTTSGGKVFPSRAAQMIDFEDSDNSEYEPEKDMEDDEDFEDDGEYSCDKCDMSFKNAESLKRHIKTHFIKSEVMSDDEGPVKTEPTNLGCNVCGESFTEALDLLAHAEIHARFQPFKCLLCGETFFEENKIKMHLMENHRDEMTESSCKLCGKQCRDQRSLIKHSWEHSREKNHSCSKCGKTFHNKARLKRHIASHRNKSVVCEICHEEFSDGRQLMNHRHSHTKSNQFPCTECGKTFGSRSSQQIHIRIHTGERPYSCRFCWKAFADGGTLRKHERIHTGEKPYCCLVCPRAFNQRVVLREHIRSHHSAPDPVHGTTLTPYYCSLCGELFAVSLDLIHHLIEHSDRSTAAKRVQPTGPRKYKRRRKLNDDEMLPVDGKYPRIPQSKIKQEPADIESNSESNSSSNNHMIINNNNNKKGLLTQSFESYVVPDRVIEFKLPDEIFQTVSRDRKNEEKKQQQVQTSSRPKMIFTEKTRVPAFDGKRKSRTMIQKQVLKPHPTTSRMVRTIKKEVKNKPSIIQERYAYNDKSTSGSETCSNEDDPNEDVLRTLLKRERKLSEKFTIDLVNDLQDILRSPIKTNLNIDEDDDQYPELPNVRRRNTVSRYSISVTNNNANGAKNDNNHDNDDEQSESELENIVIKQEYVNDGHVCNICGSSFSSRDQLLGHVSIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00319915;
90% Identity: iTF_00319915;
80% Identity: -