Basic Information

Insect: Chironomus riparius
Gene Symbol: -
Assembly: GCA_001014505.1
Location: JXPV01026142.1:8808-13758[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.6e-06 0.00052 20.4 0.9 1 23 172 194 172 194 0.97

2 15 0.0031 0.19 12.3 3.3 1 23 200 222 200 222 0.97

3 15 0.0013 0.077 13.6 0.6 1 23 347 370 347 370 0.94

4 15 0.0087 0.53 10.9 0.4 1 23 377 400 377 400 0.92

5 15 1.7e-05 0.001 19.5 3.5 1 23 456 478 456 478 0.97

6 15 0.0076 0.46 11.1 0.0 3 23 501 521 501 521 0.97

7 15 0.11 6.6 7.5 0.5 1 23 527 550 527 550 0.92

8 15 0.0083 0.5 11.0 2.0 2 19 558 575 557 576 0.96

9 15 8.3e-05 0.005 17.3 5.2 1 23 585 607 585 607 0.97

10 15 0.0029 0.17 12.5 0.6 2 23 613 634 612 634 0.96

11 15 3.6e-06 0.00022 21.6 0.3 1 23 640 662 640 662 0.98

12 15 0.00046 0.028 15.0 0.3 1 23 668 690 668 690 0.98

13 15 0.00056 0.034 14.7 2.2 1 23 696 718 696 719 0.95

14 15 0.013 0.75 10.4 0.1 1 23 733 755 733 755 0.97

15 15 0.0001 0.006 17.0 0.2 1 23 1056 1078 1056 1078 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.6e-06	0.00052	20.4	0.9	1	23	172	194	172	194	0.97
2	15	0.0031	0.19	12.3	3.3	1	23	200	222	200	222	0.97
3	15	0.0013	0.077	13.6	0.6	1	23	347	370	347	370	0.94
4	15	0.0087	0.53	10.9	0.4	1	23	377	400	377	400	0.92
5	15	1.7e-05	0.001	19.5	3.5	1	23	456	478	456	478	0.97
6	15	0.0076	0.46	11.1	0.0	3	23	501	521	501	521	0.97
7	15	0.11	6.6	7.5	0.5	1	23	527	550	527	550	0.92
8	15	0.0083	0.5	11.0	2.0	2	19	558	575	557	576	0.96
9	15	8.3e-05	0.005	17.3	5.2	1	23	585	607	585	607	0.97
10	15	0.0029	0.17	12.5	0.6	2	23	613	634	612	634	0.96
11	15	3.6e-06	0.00022	21.6	0.3	1	23	640	662	640	662	0.98
12	15	0.00046	0.028	15.0	0.3	1	23	668	690	668	690	0.98
13	15	0.00056	0.034	14.7	2.2	1	23	696	718	696	719	0.95
14	15	0.013	0.75	10.4	0.1	1	23	733	755	733	755	0.97
15	15	0.0001	0.006	17.0	0.2	1	23	1056	1078	1056	1078	0.96

Sequence Information

Coding Sequence: ATGGATGatcataattttatgctttgGTCTGATCGTGGACACGAAGAGCCAAATTATGATGATATTATCGAAAATGATACAGAAATCgatgatttaaatgaattaatagaaGAGCAAGTTGAGGGATATGAAGAAGTTAATATATTAGAAGATAATTCAAATGGAGACGATGATACTTATTATATCGACGAGGATATAATGCCAGAAAAGTATGATTCACAAGAAAACTTAATCTACCTCACAGATGATGGAATAATTAGTAAAAGTTCACAAATTGGTGTCGGTATGAGCCATTTAATTGAACAGAGAGTACAGGAAGCAGAATCTAAAATTATTGGCGATCAAGATGCACAAGAAGAATATACAGCAGAGGTAATAACAGAAGAAGATTGGATACAATCTCAGGGTGAAGAAATTGTGCCTGTTGCAATGGAACAAATTGTATCGTCTGAAAATTATCCAGAAGATGATGTTGTGCCATTACAAACAGACGAATATACAACACAACGACCATATCCATGTGACTTTTGTAGTCGTCGGTTCCGTAAAAAAGCCAATCTACAGAATCATATGATTGCACATCAAAATGTTCGTCCACATATGTGTAATTTGTGTGGATCACGTTATGTAAGGAAGtgtgatttaattaatcatttgaaaattcatgcATACAACATTGAAGATGAACAATTGGCTGGTCCAAGTACAAGTGGTAAAAAGAGACCACCAAAATACGATGATTTAGCATTCTTTAGTGAATCATATGATGATCTACCAGACGACGACGACGATTTCGATTACAATCATTACTCTAAACCAACAACAAAGCCATTGCCAAAAGTTACGAAACAAAGTTCAAAAGCATCAACAAGTAAAAAGTCTTCAGCTAAGAAAGGAAAAACATTTCCAACTAAATTCGAGAGGATCACAAAGGAAAAGCCAGTTCATGtctcaaattttacaataagcAATACACCAAGCATTGTTAAAAAGGAAGATTATGTTGAGAAATATCCAATTATAGATCCAAGAAAGCCTTTTGTCTGTCAAAATTGTGGTGTAGGATTTACACGAGAAAAAGCATTAGAATCACACAGTAAACATGCTCATGCCAATTTGGATCCAACACACGATTGTGAAATTTGTGGAGATTCCTTCTTTGACAGTACATCACTCGAAGAGCACTTGGAATTACGACATAATTATTCATCTAGAGTACGTAAAAGTGGTGGAAAGACAACAAGCGGTGGTAAAGTTTTTCCTAGTCGTGCAGCTCAAATGATGGATTTTGAGGATAGTGATAATTCCGAGTATGAGCCAGAAAAGGATTTAGACTATGACGAGGATTTCGAAGATGACGGTGATCATTGCTGCGATAAATGTGATATGGCATTTAAGAATGCTGAAGGTTTAAAGCGCCACATAAAGacacattttataaaatcagaaattatGTCTGATGATGAAGGACCAGTCAAAACAGAATTAACTAATTTGGGTTGTAATGTTTGCGGAGAGAGCTTTACAGAAGCATTAGACTTATTAGCTCACGCAGAAATTCATGCTCGATTTCAGCCattcaaatgtttattatGTGGTGAGACATTCTTTGAAGAGAACAAGATCAAAATGCATCTTATGGAAAATCATCGCGATGAAATGACTGAATCGTCATGTAAGCTATGCGGTAAGCAATGTCGTGATCAACGATCATTAATTAAGCATTCATGGGAACATTCACGTGAAAAGAATCATTCATGCTCAAAATGTGGAAAGACATTCCATAATAAGGCACGATTGAAACGTCATATTGCATCGCACAGAAACAAGAGTGTAGTTTGTGAAATCTGCCAAGAAGAATTCTCTGACGGTCGACAGCTCATGAATCATCGTCATTCTCATACCAAGTCTAATCAATTTCCATGTACTGAATGTGGCAAAACTTTTGGATCTAGAAGCTCACAACAAATTCATATTCGAATTCACACTGGTGAACGTCCTTATTCCTGTCGATTCTGTTGGAAGGCATTTGCTGATGGAGGAACTTTGAGAAAGCACGAACGAATTCATACAGGTGAAAAACCTTACTGCTGCTTGGTATGTCCTCGTGCCTTCAATCAACGCGTTGTTTTACGCGAGCATATTCGATCACATCACTCAGCACCAGATCCAGTTCATGGAACAACTCTTACGCCATATTATTGCAGTCTTTGCGGTGAACTATTTGCAGTCTCATTGGATctaattcatcatttaattgaGCATAGCGATAGAAGTACGGCTGCTAAGCGTGTCCAACCGACGGGTCCAAGAAAGTATAAGCGACGTCGAAAGTTGAATGATGACGAGATGGTGCCAGTTGATGGAAAATATCCAAGAATTCCACAAAGTAAAATTAAGCAAGAACCAGCCGATATTGAGAGTAACAGTGAGAGTAGCAGTAGTCATAatcaaagcatttttaataacaataatatgaAGGGGTTATTGACACAATCGTTTGAATCTTATGTAGTGCCTGATagtataattgaatttaagctTCCGGATGAAATATTCCAAACGGTTTCACGCGATAGAAAGAATGAAGAGAAGAAGCAACAACAAGTACAAACGAGTTCAAGACCGAAAATGATATTTACGGAGAAAACAAGAGTTCCTGTTTATGACGGCAAGCGTAAGTCACGGACAATGATCCAAAAGCAAGTTCTAAAGCAACATCCCACCACATCAAGAATGGTCAGGACTATAAAGAAGGAAGTAAAGAATAAGCCGTCAATAATTCAAGAACGTTATGCGTATGACGATAAAAATACGTCTGGAAGTGAGACATGCTCGAATGAAGACGATCCAAATGAGGATGTACTTCGTACCTTACTCAAGCGCGAACGCAAGTTGTCTGAGAAATTTACAATTGATTTAGTTAATGATTTACAAGATATCCTACGATCACCAATCAAGACTAGTGTTGCTATGGACGAGGATGATAATCAATATACAGAATTACCAAATGCCCGACGTCGTAATACACTATCAAGATATTCAATAAGTATGACAAATAACAATGCAAATGGAGccaaaaatgataataacTACGATAATGATGAGGATTCAGAATCGGAACTAGATAATATTGTTATTAAGCAAGAATATGTTAATGATGGTCATGTTTGTAACATTTGTGGCTCTGCCTTCTCGTCACGAGATCAGTTATTAGAACATGTATCAATtcatatttaa
Protein Sequence: MDDHNFMLWSDRGHEEPNYDDIIENDTEIDDLNELIEEQVEGYEEVNILEDNSNGDDDTYYIDEDIMPEKYDSQENLIYLTDDGIISKSSQIGVGMSHLIEQRVQEAESKIIGDQDAQEEYTAEVITEEDWIQSQGEEIVPVAMEQIVSSENYPEDDVVPLQTDEYTTQRPYPCDFCSRRFRKKANLQNHMIAHQNVRPHMCNLCGSRYVRKCDLINHLKIHAYNIEDEQLAGPSTSGKKRPPKYDDLAFFSESYDDLPDDDDDFDYNHYSKPTTKPLPKVTKQSSKASTSKKSSAKKGKTFPTKFERITKEKPVHVSNFTISNTPSIVKKEDYVEKYPIIDPRKPFVCQNCGVGFTREKALESHSKHAHANLDPTHDCEICGDSFFDSTSLEEHLELRHNYSSRVRKSGGKTTSGGKVFPSRAAQMMDFEDSDNSEYEPEKDLDYDEDFEDDGDHCCDKCDMAFKNAEGLKRHIKTHFIKSEIMSDDEGPVKTELTNLGCNVCGESFTEALDLLAHAEIHARFQPFKCLLCGETFFEENKIKMHLMENHRDEMTESSCKLCGKQCRDQRSLIKHSWEHSREKNHSCSKCGKTFHNKARLKRHIASHRNKSVVCEICQEEFSDGRQLMNHRHSHTKSNQFPCTECGKTFGSRSSQQIHIRIHTGERPYSCRFCWKAFADGGTLRKHERIHTGEKPYCCLVCPRAFNQRVVLREHIRSHHSAPDPVHGTTLTPYYCSLCGELFAVSLDLIHHLIEHSDRSTAAKRVQPTGPRKYKRRRKLNDDEMVPVDGKYPRIPQSKIKQEPADIESNSESSSSHNQSIFNNNNMKGLLTQSFESYVVPDSIIEFKLPDEIFQTVSRDRKNEEKKQQQVQTSSRPKMIFTEKTRVPVYDGKRKSRTMIQKQVLKQHPTTSRMVRTIKKEVKNKPSIIQERYAYDDKNTSGSETCSNEDDPNEDVLRTLLKRERKLSEKFTIDLVNDLQDILRSPIKTSVAMDEDDNQYTELPNARRRNTLSRYSISMTNNNANGAKNDNNYDNDEDSESELDNIVIKQEYVNDGHVCNICGSAFSSRDQLLEHVSIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00320896;
90% Identity: iTF_00320896;
80% Identity: -