Cten014459.2
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754304.1:45501598-45507441[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-11 3.4e-08 33.2 0.0 1 39 546 585 546 589 0.90 2 4 9.3e-12 1.5e-08 34.4 0.0 2 39 601 638 600 641 0.94 3 4 4.1e-16 6.5e-13 48.4 0.0 3 45 657 700 655 700 0.97 4 4 2.9e-19 4.6e-16 58.5 0.0 1 41 707 748 707 750 0.97
Sequence Information
- Coding Sequence
- atgtcTTTACAGAGCCTCATTCGGACAGCagaacaattaaaaattaaaggattGTGTGAAATTAACGACCAAACAGCCGCGGAATCGGATACGGAAGTAATATATCCGCCACATAAGAAAATACGTGCATCGAGGCACTACGAGAGTCACCATAATCATAATAACAATAGTAGTAGTAGCAATAAGAATAATCAATCGTCGAACAATCGTGAAGAATCTATAAAACAAGGATCATCTGCAAGTCATAGTGTCATTGAGAAAGATGCACAACCAATAGCTTCACAAGATACAGATAAACGTAAATCGAAATCACCAATAAAGGATAtaggaaaaaattcatcatcatcatcgtcgtcgtcATCGCCAACATCGCCGAGTAATCAAAATCAAAGCAAAAACATGGCTAGTCTTGAAATGGGAATGAACGGAAATGTGGTGATGGGAGTTCCACTAACATATATGGATTTCGCACCCGAGCCACCCGCACCAACTGCAACGCCTGTCATTACAACAGAAGTAAATTGCACGCCGAGCCATGATACAAAAGATTTGTCAAtagaCTCAACGCAAACTAACGGTAACGAGAATGCgagaattataaaatttgaaacactACGAAGCCTCGATCCGTCTGAAACGATTGTTGAGTTTGATAATTCCATGCAACATTCCATTTGTCGTCTAGATCATCATACGTCAACGGTATCTGCCCATCATCCAACCGTTACGTCAAACAGTCCAATCTATACGCATCATTCATCACCCGTTCAAATCATAACGACATGTCCATCGCCTGTAACATCATCAATGAATGATTTAAGTGGCTTAAAGACATCAATTATAACGACGTCTGCGATTACGACTCCAACATCACAATCACAGAATttaaatcatcatcagcatcatatccatcatcatcatttgcttcaaaatcatctccaaaatcatcatcatcatcaacagcagcagcaacaacagcaaatggaacatgatgaaaataatcatcatcagcaaTCCCACCAGCATcatcagcagcaacagcagcaacatgaaaataatcatCTTCAACAACAAATGGAGCAGCAATCGAGACAAAAtgagcagcagcagcagcaacaacaacaaattccACACATTCATACGCTTCACCATACACCGCAATCGATAACAATTCAACAAGCACGTCCAATCATACAGCATCATCAGATAATTGAAACAATAAAGACTGAGGATGTGGATATAAAGCCATCGATACATGATTTGATGGGGGTTGGAAATATGGAAGTAGATGGGCAgggaaataataatgataatgttCACGGCATTGTCGTGACACCGGAAATTGCAAATATGATGACCACAACACCAACATCGCAAATTGATACCATCATACAAAATCATAACAATCTacacaatcatcatcatcatcaacaacaacacCATCTGCAtctaaatcatcaaaataattcaacagaCTCGGAGGACTCTAAAATGCAGACGGATCATAATGGTGGCAGTAATGGTGGACAGCAGCTACAATATATAACATTAGGCAATAATATTCCAGCAACATCAGCTACGACGCCAACGAGTGACTCGAAAGGTGCAAATAACAATGGGGGGCCTAAGACGTGGACACCGAGCGATATGGAATCAGCTCTGGAGGCACTAAGGTCTCACAATATGAGCTTAACGAAGGCATCAGCAACATACGGTATTCCATCAACAACATTATGGCAACGTGCCCATAGACTAGGAATTGACACACCGAAAAAGGAGGGTCCTACGAAGACGTGGAATGAGGATTCACTTAATAGTGCACTCGACGCTCTTCGTACGGGTACAATTTCGGCTAATAAAGCTTCAAAGGCCTTTGGCATTCCGTCTTCCACATTGTATAAAATTGCTCGACGTGAAGGCATTCGCTTAGCTGCACCCTTCAATGCTGCACCCACATCATGGTCAGCTGAGGATCTCGAAAAAGCTTTAGAAGctatTCGTGCTGGCGCAGCTTCGGTACAGAAGGCAAGCTCTGAATTTGGAATTCCTACAGGTACACTTTATGGACGTTGCAAACGCGAGGGAATCGAGCTGTCACGATCAAATCCAACACCTTGGTCAGAGGACGCAATGATGGAAGCACTAGAAGCTGTTCGtgtCGGTCAGATGTCCATAAATCAAGCAGCAATTCACTACAACTTACCGTATTCATCGCTATACGGTAGATTCAAGCGAGGAAAATATGGCGATCCGCCAAATGGAAATTCACATAATGACTCATCATCACACAACACAATTGAACATAGtccagaaaattcaataagtaATTATGGACATCATACATTAATAGCTGATACAAATGTGCCGCAATTACAAGAACAAATCATCTATCAGCAACATTATTCACCATCAACACAATTAATTCATCAACAACCACcacaaatttatcatcatcaacaaattatttatcatCAAAGTCCGCCACCACATCCACAGATTTtgcaaattcatcaaattaaaaaggaGACTAGTTGA
- Protein Sequence
- MSLQSLIRTAEQLKIKGLCEINDQTAAESDTEVIYPPHKKIRASRHYESHHNHNNNSSSSNKNNQSSNNREESIKQGSSASHSVIEKDAQPIASQDTDKRKSKSPIKDIGKNSSSSSSSSSPTSPSNQNQSKNMASLEMGMNGNVVMGVPLTYMDFAPEPPAPTATPVITTEVNCTPSHDTKDLSIDSTQTNGNENARIIKFETLRSLDPSETIVEFDNSMQHSICRLDHHTSTVSAHHPTVTSNSPIYTHHSSPVQIITTCPSPVTSSMNDLSGLKTSIITTSAITTPTSQSQNLNHHQHHIHHHHLLQNHLQNHHHHQQQQQQQQMEHDENNHHQQSHQHHQQQQQQHENNHLQQQMEQQSRQNEQQQQQQQQIPHIHTLHHTPQSITIQQARPIIQHHQIIETIKTEDVDIKPSIHDLMGVGNMEVDGQGNNNDNVHGIVVTPEIANMMTTTPTSQIDTIIQNHNNLHNHHHHQQQHHLHLNHQNNSTDSEDSKMQTDHNGGSNGGQQLQYITLGNNIPATSATTPTSDSKGANNNGGPKTWTPSDMESALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKTWNEDSLNSALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTSWSAEDLEKALEAIRAGAASVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYGDPPNGNSHNDSSSHNTIEHSPENSISNYGHHTLIADTNVPQLQEQIIYQQHYSPSTQLIHQQPPQIYHHQQIIYHQSPPPHPQILQIHQIKKETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319613;
- 90% Identity
- -
- 80% Identity
- -