Crip004551.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- -
- Assembly
- GCA_001014505.1
- Location
- JXPV01010918.1:1-6323[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 4.2e-08 32.8 0.0 1 38 542 580 542 585 0.90 2 4 5e-12 1.4e-08 34.4 0.0 2 39 602 639 601 642 0.94 3 4 2.2e-16 6e-13 48.4 0.0 3 45 658 701 656 701 0.97 4 4 1.6e-19 4.2e-16 58.5 0.0 1 41 708 749 708 751 0.97
Sequence Information
- Coding Sequence
- atgtctTTACAGAGCCTCATTCGGACGGcagaacaattaaaaattaaaggattGTGTGAAATTAACGACCAAACAGCCGCGGAATCAGATACGGAAGTAATTTATCCGCCACATAAGAAAATACGTGCATCGAGGCAGCACTACGAGAGTCAccataatcataataatagtAGTAGTAAGCATCGAGAAGAATCCACAAAACAAGGATCATCTGCAAGTCATAGTGTCATTGAGAAAGATGCACAACCAATAGCTTCACAAGATAGAGATAAACGTAAATCGAAATCACCAATAAAGGATATaggaaaaaattcatcatcatcgccaGCATCGCCGAGTAATCAAAATCAAAGCAAAAACATGGCTAGTCTTGAAATGGGAATGAACGGAAATGTGGTGATGGGAGTTCCACTAACATATATGGATTTCGCACCCGAGCCACCCGCACCAACTGCAACGCCTGTTATTACAACAGAAGTAAATTGCACGCCGAGCCATGATACAAAAGATTTGTCAAACTCATCGCAAACTAACGGTAACGAGAATGCGagaattataaaatttgaaacattGCGAAGTCTCGATCCGTCAGAAACGATTGTTGAGTTTGATAATTCCATGCAACATTCCATTTGTCGTCTAGATCATCATACGTCAACGGTTTCTGCCCATCATCCAACCGTTACGTCAAACAGTCCAATCTATACGCATCATGCATCACCTATTCAAATCATAACGACATGTCCATCGCCTGTTACATCATCAATGAATGATTTAAGTGGTTTAAAGACATCAATTATTACGACAGCTGCGATTACAGCTACTCCAACATCACAATCACAGACTATGAATCATCATCAGTctcatattcatcatcatcatttgctCCAAAATCATCTACAACAATCACATCAGCAACATCAGCAACAAATGCAACATATGGAGCAAATGGAGCAACAATCAAGACAGAaccagcaacagcagcaaatGGAACAACAATCAAGACAGAACCAGCATCAGCAACAAATGGAACAGCAAATGGAACAACAATCAAGACAGAATCAagaacaacagcaacagcagcagcagaatcagcaacaacaacaaattccACATATTCATACGCTTCACCATACACCACAAACAATAACAATTCATCAAGCACGTCCAATAATACAGCATCATCAGATAATTGAAACAATAAAGACTGAGGATGTCGATATAAAGCCATCGATACATGATTTGATGGGGGTTGGAAATATGGATGTAGATGGGCAgggaaataataatgaaaatgttcatgGTATTATTGTGACGCCAGAAATTGCAAATATGATGACCACAACACCAACATCGCAAATTGATACCATCATAcaaaatcacaataatttacacaatcatcaacaacaacaacaacaacaacaacaacatcattttcatctgAATCATCAAAACAACTCAACAGATTCTGAGGATTCTAAAATGCAAACGGATCATAATGGCAGTAATGGAGGGCAGCTACAATATATAACATTAGGCAATAATATTCCAGCAACATCCGCAACAACGCCAACGAGTGACTCAAAAGGAGGCGCAAATAATAATGGAGGGCCTAAGACCTGGACACCGAGTGATATGGAATCAGCTCTTGAGGCACTTAGATCTCATAATATGAGTTTAACGAAGGCATCAGCAACATATGGTATTCCATCGACAACATTATGGCAACGTGCACATAGACTAGGAATTGTTCTTGCGAAAACAGACACACCGAAAAAGGAGGGTCCTACGAAGACGTGGAATGAGGATTCACTTAATAGTGCACTCGACGCTCTTCGTACGGGAACAATTTCGGCAAATAAAGCTTCAAAGGCCTTTGGAATTCCGTCTTCTACATTATATAAAATTGCTCGACGTGAAGGTATTCGTTTAGCTGCACCTTTTAATGCTGCACCTACATCATGGTCAGCCGAGGATCTCGAAAAAGCTTTAGAAGCTATTCGTGCCGGCGCAGCTTCCGTTCAAAAAGCGAGCTCTGAATTTGGAATTCCTACAGGTACATTATATGGACGTTGCAAACGTGAAGGAATCGAGTTATCACGATCAAATCCAACTCCGTGGTCCGAGGACGCAATGATGGAAGCACTAGAAGCTGTTCGTGTCGGTCAGATGTCTATAAATCAAGCAGCAATTCACTACAATTTACCGTATTCATCGCTGTACGGTAGATTCAAGCGAGGAAAATATGGTGATCCGCCAAATGGAAACTCACATAATGACTCATCATCACACAATACAATTGAACATAGTccagaaaattcaataagtaATTATGGACATCATACATTAATAGCTGATACAAATGTGCCGCAATTACAAGAACAAATCATCTATCAGCAACATTATTCACCATCAACACAATTAATACATCAACAACCACCACAAATATATCACcatcaacaaattatttatcatcaaagTCCGCCGCCACATCCACAGATTTtgcaaattcatcaaattaaaaaggaGACTAGTTGA
- Protein Sequence
- MSLQSLIRTAEQLKIKGLCEINDQTAAESDTEVIYPPHKKIRASRQHYESHHNHNNSSSKHREESTKQGSSASHSVIEKDAQPIASQDRDKRKSKSPIKDIGKNSSSSPASPSNQNQSKNMASLEMGMNGNVVMGVPLTYMDFAPEPPAPTATPVITTEVNCTPSHDTKDLSNSSQTNGNENARIIKFETLRSLDPSETIVEFDNSMQHSICRLDHHTSTVSAHHPTVTSNSPIYTHHASPIQIITTCPSPVTSSMNDLSGLKTSIITTAAITATPTSQSQTMNHHQSHIHHHHLLQNHLQQSHQQHQQQMQHMEQMEQQSRQNQQQQQMEQQSRQNQHQQQMEQQMEQQSRQNQEQQQQQQQNQQQQQIPHIHTLHHTPQTITIHQARPIIQHHQIIETIKTEDVDIKPSIHDLMGVGNMDVDGQGNNNENVHGIIVTPEIANMMTTTPTSQIDTIIQNHNNLHNHQQQQQQQQQHHFHLNHQNNSTDSEDSKMQTDHNGSNGGQLQYITLGNNIPATSATTPTSDSKGGANNNGGPKTWTPSDMESALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIVLAKTDTPKKEGPTKTWNEDSLNSALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTSWSAEDLEKALEAIRAGAASVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYGDPPNGNSHNDSSSHNTIEHSPENSISNYGHHTLIADTNVPQLQEQIIYQQHYSPSTQLIHQQPPQIYHHQQIIYHQSPPPHPQILQIHQIKKETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320523;
- 90% Identity
- -
- 80% Identity
- -