Crip013126.1
Basic Information
- Insect
- Chironomus riparius
- Gene Symbol
- topi
- Assembly
- GCA_001014505.1
- Location
- JXPV01004341.1:18313-20333[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.057 2.7e+02 1.9 0.0 19 51 86 118 82 120 0.86 2 6 0.15 7.2e+02 0.5 0.0 26 45 133 152 128 155 0.88 3 6 0.0071 33 4.8 0.1 14 49 282 319 280 322 0.77 4 6 0.022 1.1e+02 3.2 0.1 17 44 318 345 316 352 0.87 5 6 0.00022 1 9.6 0.4 15 41 378 404 374 415 0.78 6 6 8.1e-05 0.38 11.0 0.0 25 45 476 496 464 503 0.87
Sequence Information
- Coding Sequence
- ATGGAACCGTGCTTGGCGACAGTTTGTGACAGTTGTGGTAAGCAATTTTCTAACGTTTATACATTAAATGCTCACAAGAGACAAGtacatgaaaataagaaaCCTTACGAATGTAATAAATGCACAAAGTCGTTCTCaacaaaatacaaattaaataGACACACTCAAGGAATTCACTCTGATGTTCGAGATAAGTTTTGTGAGATTTGCGGACATGCATTTAAGACACGAGAAATGTTGATTAAGCATCATCGTACACATTTTAAAGGACCTTTTACTTGTCAAAAATGCAATGAAGTTTTCAAGTATAAAGCAAGTTttgattatcattttaaaattaagcatgAAACTAAAGAACCTAGCGAGTTAAAGACTAATGATAAAGTCAAAAGCTTTGAATGTAAGATATGtttaaaagtttacaaaaacTTCAAGTCTCTTCAAAATCACGAAGAAAATCATAACAAAGGATctgaaaataaagtcaaaagaGCTGCACTAGAAACTTTCGTATGTTATTTctgcaacaaaaattttgatcataaaCAGGATTTTGAAGTTCATTTGACATCACATGAGGACGATTTAGAATATAGAATTGAAAGTATGATTGTTGAGGAGTCGTCTGACatcaataatataataatagaGCAAGAGTCTGAAATGGAATATATACAAGAAGACAGTTTAGATATTGCTGATAGAGCAATTAAGCAGGAACAATTACCAGAAATTATTGTTGATGCCTGTCATTCTTTTGAAGAGGTCACAGAAACTGTTGATGCActtattaaagaagaaaatgttgatCACCAAATTATTAGCTTCCATTCATTAGAGTTTAAACCAAAGCAAAggataaaaaaggaaaattttgagaaaattatttgtgacATTTGCGGAATgcttttcatgaataaatcaCATCTTAGACGTCATCATGCAAGAAAACATCGTGACAAAAGcgaatttaaatatgaatgtgATATTTGTGCTGCAAAATTTTTACTCCGTTACGATTTACAAAGGCACATGATTAAACATAATTCAGTCCGTGACATCGAATGTCCACAATGCCAGAAAcaatttaaaaccaaatcATCACTAGATTGCCATATCAAGTCCATTCACGATAGAAGTAGAAGTAAATCAGAGAAACAATTCGTTTGTAACATTTGCTCACGATCTTACTTTCATAAACGACATTTGGATTATCATACAAgAAAGCATACAGATGATCGAAGATATGGATGTGATAAATGTGATAAATCATTTCTGTACAGTGATGCAGTAAAGTGGCATCAAATAAGAGTTCATAAAGAACCACCTCCCTTCGTCTGCAATCTTtgtcataaaaagtttatacaTTTTAAGACTTTTGAAACACACTCAAAGGAGCACAATGAAGAAACAGGATCATTGTCTGTGACGTGTCCGAtttgtaaaaagaaaatatcgGAAAAACGGCATCTACCTAGGCACGTACGTACACATTTAAAGAAAGGATTCAGTTGCCATTTTTGTCATGAGTCATTTAAAGAGAGATTTCAACTTACAAAgcACTTGTTACAGTGCGAAGATAAGCATAACAAAGAGGTGGAAATTATCTATGAATCGTTTGTTGAACAGGAATAA
- Protein Sequence
- MEPCLATVCDSCGKQFSNVYTLNAHKRQVHENKKPYECNKCTKSFSTKYKLNRHTQGIHSDVRDKFCEICGHAFKTREMLIKHHRTHFKGPFTCQKCNEVFKYKASFDYHFKIKHETKEPSELKTNDKVKSFECKICLKVYKNFKSLQNHEENHNKGSENKVKRAALETFVCYFCNKNFDHKQDFEVHLTSHEDDLEYRIESMIVEESSDINNIIIEQESEMEYIQEDSLDIADRAIKQEQLPEIIVDACHSFEEVTETVDALIKEENVDHQIISFHSLEFKPKQRIKKENFEKIICDICGMLFMNKSHLRRHHARKHRDKSEFKYECDICAAKFLLRYDLQRHMIKHNSVRDIECPQCQKQFKTKSSLDCHIKSIHDRSRSKSEKQFVCNICSRSYFHKRHLDYHTRKHTDDRRYGCDKCDKSFLYSDAVKWHQIRVHKEPPPFVCNLCHKKFIHFKTFETHSKEHNEETGSLSVTCPICKKKISEKRHLPRHVRTHLKKGFSCHFCHESFKERFQLTKHLLQCEDKHNKEVEIIYESFVEQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320904;
- 90% Identity
- iTF_00319928;
- 80% Identity
- iTF_00319928;